View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_96 (Length: 268)
Name: NF16020_low_96
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_96 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 34989196 - 34988931
Alignment:
| Q |
1 |
ataggacaaaaaagtttaggaataaaaatttatattactcttnnnnnnnnngttaattagaaaaatctaattacgctaaaattttctataatttagaaag |
100 |
Q |
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| T |
34989196 |
ataggtcaaaaaagtttaggaaaaaaaatttatattactcttaaaaaaa--gttaattagaaaaatctaattacgctaaaattttctataatttagaaag |
34989099 |
T |
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| Q |
101 |
gtattaatgaataagattgtgataatttatatgcagtgcttatgggaacgtagggttttcaacaggatatagtcgttctaggcaattgaaacatgattta |
200 |
Q |
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| T |
34989098 |
gtattaatgaataagattgtgataatttatatgcagtgcttatgggaacgtagggttttcaacaggatatagttgttcaaggcaattgaaacatgattta |
34988999 |
T |
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| Q |
201 |
atgtgcaaagattcatggattggattttctggtaggtggagtacaaaagggaagtttatccttatttt |
268 |
Q |
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| T |
34988998 |
atgtgcaaagattcatggattggattttctggtaggtggagtgcaaaagggaagtttatccttatttt |
34988931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 265
Target Start/End: Complemental strand, 35042629 - 35042496
Alignment:
| Q |
132 |
tgcagtgcttatgggaacgtagggttttcaacaggatatagtcgttctaggcaattgaaacatgatttaatgtgcaaagattcatggattggattttctg |
231 |
Q |
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| T |
35042629 |
tgcagtgcttatgggaacgtagggttgtcaacaggatatagctgctcaagacaattgaaacctaatttaatgtgcagagattcatggattggattttcag |
35042530 |
T |
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| Q |
232 |
gtaggtggagtacaaaagggaagtttatccttat |
265 |
Q |
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| T |
35042529 |
gtagatggagtacagaagggaagcttattcttat |
35042496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 15560102 - 15560167
Alignment:
| Q |
200 |
aatgtgcaaagattcatggattggattttctggtaggtggagtacaaaagggaagtttatccttat |
265 |
Q |
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| T |
15560102 |
aatgtgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttat |
15560167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 15559829 - 15559768
Alignment:
| Q |
204 |
tgcaaagattcatggattggattttctggtaggtggagtacaaaagggaagtttatccttat |
265 |
Q |
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| T |
15559829 |
tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttat |
15559768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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