View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_98 (Length: 265)
Name: NF16020_low_98
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_98 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 47426487 - 47426689
Alignment:
| Q |
53 |
ttcaatattgaatctttgcttactttgtaccattcaagaattcacgagtaataataggaatcatcactagtagtaaccgcatagctaccaaaggaatcat |
152 |
Q |
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| T |
47426487 |
ttcaatattgaatctttgcttactttgtaccattcaagaattcacgagtaataataggaatcatcactagtagtaaccgcatagctaccaaaggaatcat |
47426586 |
T |
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| Q |
153 |
gcttactctccttcattgaattaacaacccaatgatcatagcgtgctgagtttgacaacatattttgcttcaaagaagcaaattctatagacttgtttct |
252 |
Q |
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| T |
47426587 |
gcttactctccttcattgaattaacaacccaatgatcatagcgtgctgagtttgacaacatattttgcttcaaagaagcaaattctatagacttgtttct |
47426686 |
T |
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| Q |
253 |
ctg |
255 |
Q |
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||| |
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| T |
47426687 |
ctg |
47426689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 47426417 - 47426457
Alignment:
| Q |
16 |
caaaacatacatcaagttttgttacaaaaattccaatttca |
56 |
Q |
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| T |
47426417 |
caaaacatacatcaagttttgttacaaaaattccaatttca |
47426457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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