View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_99 (Length: 262)
Name: NF16020_low_99
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 52512316 - 52512569
Alignment:
| Q |
1 |
aatattattattcttcatctctgttgaatttgttgtggaaggatcaagtattcgataacattccatgctggaattaggagcagtgtaattaagcatttca |
100 |
Q |
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| T |
52512316 |
aatattattattcttcatctctgttgaatttgttgtggaaggatcaagtattcgataacattccatgctggaattaggagcagtgtaattaagcatttca |
52512415 |
T |
|
| Q |
101 |
gtgaatttggggaaattagcaaatgagatctcttcctttatagtactattcttggaaaactctgaatctaagttgttgttatgattgaactgtttgctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512416 |
gtgaatttggggaaattagcaaatgagatctcttcctttatagtactattcttggaaaactctgaatctaagttgttgttatgattgaactgtttgctgt |
52512515 |
T |
|
| Q |
201 |
ttaagcagctctcttcggcagcaacatcacttgtccattgatgactatgatgat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512516 |
ttaagcagctctcttcggcagcaacatcacttgtccattgatgactatgatgat |
52512569 |
T |
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