View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_high_2 (Length: 485)
Name: NF16021_high_2
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 23639225 - 23638768
Alignment:
| Q |
17 |
atgaattgaggatgtggctttacaagagaacaagttcttacctttttgcttttgtagataacatgttgaaagtttttggtttttcaaattcaaatttcat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23639225 |
atgaattgaggatgtggctttacaagagaacaagttcttacctttttgcttttgtagataacatgttgaaagtttttggattttcaaattcaaatttcat |
23639126 |
T |
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| Q |
117 |
aatatctactaaggtagctgaggaaaatgtttcacaaagatatgagaaggaaattatagagtttggaaactcatctccaatgctcactttattggctaca |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23639125 |
aatatctactaagatagctgaggaaaatgtttcacaaagatatgagaaggaaattatagagtttggaaactcaactccaatgctcactttattggctaca |
23639026 |
T |
|
| Q |
217 |
cttgcaatgttgaatttgttttgtcttgttgggatgttgctaaaggaggttgtgttaggtaaagcaagtgttacattatttgagacaatgttattgcaag |
316 |
Q |
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| T |
23639025 |
cttgcaatgttgaatttgttttgtcttgttgggatgttgctaaaggaggttgtgttaggtaaagcaagtgttacattatttgagacaatgttattgcaag |
23638926 |
T |
|
| Q |
317 |
ttttgctaagtggggttttggttcttatcaatatacctatttatcaaggccttttcctaaggagagataagggaagattgccaaggtctgttgcagttac |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23638925 |
ttttactaagtggggttttggttcttatcaatatacctatttatcaaggccttttcctaaggagagataagggaagattgccaaggtctgttgcagttac |
23638826 |
T |
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| Q |
417 |
atcaacaacattggctctaagtgtatgtgtcctctatagtgcccttggctaaattcat |
474 |
Q |
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| T |
23638825 |
atcaacaacattggctctaagtgtatgtgtcctctatagtgcccttggctaaattcat |
23638768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Complemental strand, 23625952 - 23625529
Alignment:
| Q |
17 |
atgaattgaggatgtggctttacaagagaacaagttcttacctttttgcttttgtagataacatgttgaaagtttttggtttttcaaattcaaatttcat |
116 |
Q |
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|||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23625952 |
atgagttgaggatgtgggtttataagagaacaagttcttacctttttgcttttgtagataacatgttgaaagtttttggattttcaaattcaaatttcat |
23625853 |
T |
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| Q |
117 |
aatatctactaaggtagctgaggaaaatgtttcacaaagatatgagaaggaaattatagagtttggaaactcatctccaatgctcactttattggctaca |
216 |
Q |
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| T |
23625852 |
aatatctactaaggtagctgaggaaaatgtttcacaaagatatgagaaggaaattatagagtttggaaactcatctccaatgctcactttattggctaca |
23625753 |
T |
|
| Q |
217 |
cttgcaatgttgaatttgttttgtcttgttgggatgttgctaaaggaggttgtgttaggtaaagcaagtgttacattatttgagacaatgttattgcaag |
316 |
Q |
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| T |
23625752 |
cttgcaatgttgaatttgttttgtcttgttgggatgttgttaaaggaggttgtgt---------caagtattagaatatttgaggcaatgttattgcaag |
23625662 |
T |
|
| Q |
317 |
ttttgctaagtggggttttggttcttatcaatatacctatttatcaaggccttttcctaaggagagataagggaagattgccaaggtctgttgcagttac |
416 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
23625661 |
ttttactaagtggggttttggttcttatcaatatacctatttatcaaggcctttttttaaggaaagataagggaagattgccaagatctgttgcagttaa |
23625562 |
T |
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| Q |
417 |
atcaacaacattggctctaagtgtatgtgtcct |
449 |
Q |
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|||||||||||| ||| |||||| ||||||||| |
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| T |
23625561 |
atcaacaacattagctttaagtgcatgtgtcct |
23625529 |
T |
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