View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_high_3 (Length: 464)
Name: NF16021_high_3
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 2669986 - 2670433
Alignment:
| Q |
17 |
aaccttgacactggtatcgagattcgaataacttcgtggaaaagtcaagatgatccatcaactggagatagtcatttcagtcttgattatcatggtgttc |
116 |
Q |
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| T |
2669986 |
aaccttgacactggtgtcgagattcgaataacttcatggaaaagtcaagatgatccatcaactggagatagtcatttcagtcttgattatcatggtgttc |
2670085 |
T |
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| Q |
117 |
cagatatttacttgtggaacaagcaacaaagggtgtttagaagtggttcatggaatggtcaatcttttggtggagtaccaatactaagcacaatagctgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2670086 |
cagatatttacttgtggaacaagcaacaaagggtgtttagaagtggttcatggaatggtcaatcttttggtggagtaccaatactaagcacaatagctgc |
2670185 |
T |
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| Q |
217 |
tcttaatgataaaatagttgttgatgaacatgaagcttattattatcctgcagggttgttgcagtctaatttatctagacttgttgtgaattcgaccggt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2670186 |
tcttaatgataaaatagttgttgatgaacatgaagcttattattatcctgcagggttgttgcagtctaatttatctagacttgttgtgaattcgaccagt |
2670285 |
T |
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| Q |
317 |
tcaatggaacgttatgcatggatcgaaagcactaaagattggaacaaagtatggtctgcaccagttcttcaatgtgataattatggaacttgtggtcctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2670286 |
tcaatggaacgttatgcatggatcgaaagcactaaagattggaacaaagtatggtctgcaccagctcttcaatgtgataattatggaacttgtggtcctt |
2670385 |
T |
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| Q |
417 |
ttggtatatgtgactcaaatgcttttccagtatgcaagtgtgtcacag |
464 |
Q |
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| T |
2670386 |
ttggtatatgtgactcaaatgcttttccagtatgcaagtgtgtcacag |
2670433 |
T |
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