View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_high_6 (Length: 324)
Name: NF16021_high_6
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 49691345 - 49691563
Alignment:
| Q |
18 |
attacatggatcattagagttttgcttactatttcctatttgaattattgttatgcaggaagggtagaagtccagctcggaagctaggattggttttagg |
117 |
Q |
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| T |
49691345 |
attacatcgatcattagagttttgcttactatttcctatttgaattattattatgcaggaagggtagaagtccagctcggaagctaggattggttttagg |
49691444 |
T |
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| Q |
118 |
tgatgtacatactttaatgttcaatataactagtttgtgtgcatttgggcatatatttatccttccctaccgtctttaacggcaggctatgattgaaagc |
217 |
Q |
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| T |
49691445 |
tgatgtacatactttaatgttcaatataactagtttgtgtgcatttgggcatatatttatccttccctaccgtctttaacggcaggctatgattgaaagc |
49691544 |
T |
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| Q |
218 |
agcatgaaactcaaacatg |
236 |
Q |
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| T |
49691545 |
agcatgaaactcaaacatg |
49691563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 49680376 - 49680479
Alignment:
| Q |
68 |
ttatgcaggaagggtagaagtccagctcggaagctaggattggttttaggtgatgtacatactttaatgttcaatataactagtttgtgtgcatttgggc |
167 |
Q |
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| T |
49680376 |
ttatgcaggaggggtagaagttcaacttggaagctaatattggttttaggtgatgtacaaactttaatattcaatacaactagtttgtgtgcatttgggt |
49680475 |
T |
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| Q |
168 |
atat |
171 |
Q |
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|||| |
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| T |
49680476 |
atat |
49680479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 49679704 - 49679753
Alignment:
| Q |
18 |
attacatggatcattagagttttgcttactatttcctatttgaattattg |
67 |
Q |
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| T |
49679704 |
attacatggatcattagaattttgctaactacttcctatttgaattattg |
49679753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 49691608 - 49691641
Alignment:
| Q |
280 |
gaagttgaacaaaaacttaaatatgcaagttctt |
313 |
Q |
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| T |
49691608 |
gaagttgaacaaaaacttaaatatgcaagttctt |
49691641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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