View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_high_7 (Length: 313)
Name: NF16021_high_7
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 31482400 - 31482112
Alignment:
| Q |
17 |
catttaccaccctccaacttgtggggggatattgcaccatgaataaataaaaagagataaaaaggagttaacatttgttgcttgcaatacaagtcattgt |
116 |
Q |
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| T |
31482400 |
catttaccaccctccaacttgtggggggatattgcaccatgaacaaataaaa-gagataaaagggagttaacatttgttgcttgcaatacaagtcattgt |
31482302 |
T |
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| Q |
117 |
gtgtggtacggttagagcttagtactagttagttaagagtacattaaaat--gtgtgtgtgtatcagttttacactatacattgaacaatgagaaattat |
214 |
Q |
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| T |
31482301 |
gtgtggtacagttagagcttagtactagttagttaagagtacattaaaatatgtgtgtgtgtatcagttctacactatacattgaacaatgagaaattat |
31482202 |
T |
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| Q |
215 |
cctctttgtttccattctttttatcaatataatcttcgcttctccaattttacctcgattcggtttgcttgccgtttgcacggttcatct |
304 |
Q |
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| T |
31482201 |
cctctttgtttccattctttttatcaatataatcttcacttctgcaattttacctcgattcggtttgctcgccgtttgcacggttcatct |
31482112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 13133088 - 13133116
Alignment:
| Q |
21 |
taccaccctccaacttgtggggggatatt |
49 |
Q |
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| T |
13133088 |
taccaccctccaacttgtggggggatatt |
13133116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 8838525 - 8838556
Alignment:
| Q |
18 |
atttaccaccctccaacttgtggggggatatt |
49 |
Q |
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| T |
8838525 |
atttaccaccctccaacttgtggggggatatt |
8838556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 55312464 - 55312492
Alignment:
| Q |
21 |
taccaccctccaacttgtggggggatatt |
49 |
Q |
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| T |
55312464 |
taccaccctccaacttgtggggggatatt |
55312492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 19996658 - 19996687
Alignment:
| Q |
21 |
taccaccctccaacttgtggggggatattg |
50 |
Q |
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| T |
19996658 |
taccaccctccaacttgtggggggatattg |
19996687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 37667589 - 37667625
Alignment:
| Q |
27 |
cctccaacttgtggggggatattgcaccatgaataaa |
63 |
Q |
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| T |
37667589 |
cctccaacttgtcgagggatattgcaccatgaataaa |
37667625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 26498369 - 26498397
Alignment:
| Q |
21 |
taccaccctccaacttgtggggggatatt |
49 |
Q |
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| T |
26498369 |
taccaccctccaacttgtggggggatatt |
26498397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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