View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16021_high_8 (Length: 299)
Name: NF16021_high_8
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 32593591 - 32593300
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32593591 |
attagtccaaatactaatcttaggttcaagtccatgtactgcctcagcattgatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcc |
32593492 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
32593491 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccttctgcctcttttttct |
32593392 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32593391 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctca |
32593300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 51823700 - 51823990
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51823700 |
attagtccaaatactaatcttaggttcaagtccacgtactgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcc |
51823799 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
51823800 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcatttccaagtgtcacaatcccctctgcctcttttttct |
51823899 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctc |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51823900 |
ttgcgtatagatctgcttcagctgcttgcttgcacgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctc |
51823990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 31526810 - 31527101
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31526810 |
attagtccaaatactaatcttaggttcaagtccacgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcc |
31526909 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||| |
|
|
| T |
31526910 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccctctgcctcttttttct |
31527009 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31527010 |
ttgcatatagctccgcttcggctgcttgcttgcgcgcataaaatgttgcatctgacaatgctttctgtgcttctgcctctgccttcttctca |
31527101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 37030149 - 37030440
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37030149 |
attagtccaaatactaatcttaggctcaagtcctcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcc |
37030248 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
37030249 |
ctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctcctttttct |
37030348 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||| || |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37030349 |
ttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
37030440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49187003 - 49187294
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
49187003 |
attagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcattaatcttagcaatctcttgaaacatgtcaccatttatcatcaagtaatcc |
49187102 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
49187103 |
cttacagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcttgtccaagtgtcacaattccctctgcctcctttttct |
49187202 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||| || |||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
49187203 |
ttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgacgctttctgtgcttctgcctctgccttcttctca |
49187294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49201983 - 49202274
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49201983 |
attagtccaaatactaatcttaggctcaagtccgcgtactgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcc |
49202082 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||| |
|
|
| T |
49202083 |
cttacagctgtgtagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttct |
49202182 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
49202183 |
ttgcgtatagctctgcttcggcttcttgcttgcaagcataaaatgttgcatctgctgacgctttctgtgcttctgcctctgccttcttctca |
49202274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49206938 - 49207229
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49206938 |
attagtccaaatactaatcttaggctcaagtccgcgtaccgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcc |
49207037 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||| |||||| |||||||||||||||| |
|
|
| T |
49207038 |
cttacagctgtgtagttgtttccaagtgcattgagaagtgtacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttct |
49207137 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
49207138 |
ttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcttctca |
49207229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49211512 - 49211803
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49211512 |
attagtccaaatactaatcttaggctcaagtccgcgtaccgcctcagcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcc |
49211611 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||| |
|
|
| T |
49211612 |
cttactgctgtatagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttct |
49211711 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
49211712 |
ttgcgtacagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgtgcttctgcctctgccttcttctca |
49211803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49190694 - 49190985
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
49190694 |
attagtccaaatactaatcttaggctcaagtccgcgtactgcctcagcattaatcttagcgatctcttgaaacatgccaccatttatcatcaagaaatcc |
49190793 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||| | |||| ||||||||| || |||||||| ||||||| |
|
|
| T |
49190794 |
cttacagcagtgtagttgtttccaagtgcattgagaagtgcacttagatacaccccttgagcattcccaagtgtcacaattccctctgcctcctttttct |
49190893 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49190894 |
ttgcatatagctctgcttcagctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctttctgtgcttctgcctctgccttcttctca |
49190985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 26755981 - 26756272
Alignment:
| Q |
1 |
attagtccaaatactaatcttaggttcaagtccacttactgcctcagcattaatcttagccatctcttgaaacatgccgccatttatcatcaagtaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||||||||||||||||| || || ||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
26755981 |
attagtccaaatactaatcttaggttcaagtccgcgtatagcctcagcattaatcttcgcaatatctcgaaacatgccaccatttatcatcaagtagtcc |
26756080 |
T |
|
| Q |
101 |
cttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttct |
200 |
Q |
| |
|
|||| |||||| || || ||||||||| |||||||| ||||||||| |||| |||||| | | |||| |||||| ||||| || ||||| || |||| |
|
|
| T |
26756081 |
cttacagctgtataatcacctccaagtgcgttgagaagggtacttacacacaccccttgaccattcccaagtgtcacgatcccctccgcctccttcttct |
26756180 |
T |
|
| Q |
201 |
ttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcttctca |
292 |
Q |
| |
|
|||| |||||||||||||| |||||||| || || |||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
26756181 |
ttgcatatagctctgcttcggctgcttgtttacgagcataaaatgttgcatttgccaatgctatctgtgcttctgcctctgtcttcttctca |
26756272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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