View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_low_1 (Length: 571)
Name: NF16021_low_1
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 41129716 - 41130249
Alignment:
| Q |
18 |
aatggtgcttaaaatatgcgattttactaaaaaattggggcaaactaacacatttatggcataaatataggtgtgtatgaaggcttgggtatgattagga |
117 |
Q |
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| T |
41129716 |
aatggtgcttaaaatatgcgattttactaaaaatttggggcaaactaacacatttatggcataaatataggcgtgtatgaaggcttgggtatgattagga |
41129815 |
T |
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| Q |
118 |
gtgaatgtatttcaaatttgattgtacaagtgaattcggaggtggttgttcgtagtaccaacaattgcaaaattggaagttctataggatgaggcatcac |
217 |
Q |
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| T |
41129816 |
gtgaatgtatttcaaatttgattgtacaagtgaattcggaggtggttgttcgtagtaccaacaattgcaaaattggaagttctataggatgaggcatcac |
41129915 |
T |
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| Q |
218 |
gaggaagattaagtgtttgctttctctaaatttgaatgttagatttatgcatatttacaaggaagcaaatagatgtgttagcaatatgatttgggtggta |
317 |
Q |
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| T |
41129916 |
gaggaagattaagtgtttgctttctctaaatttgaatgttagatttatgcatatttacaaggaagcaaatagatgtgttagcaatatgatttgggtggta |
41130015 |
T |
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| Q |
318 |
gatgcaaactatctatattttcggtcgacgcctgttgaggtgtatcatgttctagttgatgattttttaggtgtctcgttacctcacctaacaggagggc |
417 |
Q |
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| T |
41130016 |
gatgcaaactatctatattttcggtcgacgcctgttgaggtgtatcatgttctagttgatgatttttgaggtgtctcgttacctcacctaacagcagggc |
41130115 |
T |
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| Q |
418 |
cgacccaacgtatattcagacct-aagtgaaaatttagatgaagccttttcaaaataataatagtttatttttatcgagttatttaattctattcttgag |
516 |
Q |
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| T |
41130116 |
cgactcaacgtatattcagacctaaagtgaaaatttagatgaagccttttcaaaataataatagtttatttttatcgagttatttaattctattcttgag |
41130215 |
T |
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| Q |
517 |
gcaataatgaagatgaagatgaattacaataact |
550 |
Q |
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| T |
41130216 |
gcaataatgaagatgaagatgaattacaataact |
41130249 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 1310745 - 1310807
Alignment:
| Q |
493 |
gagttatttaattctatt-cttgaggcaataatgaagatgaagatgaattacaataactataa |
554 |
Q |
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| T |
1310745 |
gagttatttaattttatttcttgagccaataatgatggtgaagataaattacaataactataa |
1310807 |
T |
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