View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16021_low_2 (Length: 552)
Name: NF16021_low_2
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16021_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 33863806 - 33864342
Alignment:
| Q |
1 |
tccaccggtctcacgtagagggcgtggaaactttgaagccacaagttctctacaatccttccattttctccgattccaaaaggaaacccacgtaacaggt |
100 |
Q |
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| T |
33863806 |
tccactggtctcatgtagagcgcgtggaaaccttgaagccacaagttccctacggtcctttcattttctcgg-ttccaaaaggaaacccgcataacaggt |
33863904 |
T |
|
| Q |
101 |
ttcaacctcagacaccagtacattgtctgatgcgacaa-cgaccctcttcaccggtggtgggagaagtttctgtcgaagattgatattattcaacggaat |
199 |
Q |
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||||||||||||||| |||||||||| ||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||| |
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| T |
33863905 |
ttcaacctcagacactagtacattgtttgatgggacaaacgatcctcttcaccggtggtgggggaagtttctgtcgaagattgatattgttcgacaaaat |
33864004 |
T |
|
| Q |
200 |
ggcctgctgacaaagaatgtcaataaatgtctcacatccaccaccttagctccgaaattatttgttgtcgaaacatcactttgcaaggcaaaatggaaag |
299 |
Q |
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| T |
33864005 |
ggcctactgacaaagaatgtcaataaatgtctcacatccaccaccttagctccgaaattatttgttgtcgaaacatcactttgcaaggcaaaatggaaag |
33864104 |
T |
|
| Q |
300 |
gctttaatggttctataccaaatttggtcacattgatgtgaagctttgaatccccccatttaaaccgatcgactgcaaactgttgagcaaccaatctgcc |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
33864105 |
gctttaatggttctataccgaatttggtcacattgatgtgaagctttgtatccccccatttaaaccgatcggctgcaacctgttgagcaaccaatctgcc |
33864204 |
T |
|
| Q |
400 |
ttctggactccttcgaatctaacgacaccaccatgtccatacctagcgaaaaactctctgagccttact--gcagatgtgttgtttgaaaaaggagatac |
497 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
33864205 |
ttatggactccttcgaatctaacgacaccaccatgtccatacctagcgaaaaactccccgagccttactgcgcagatgtgttgtttgaaaaaggagatac |
33864304 |
T |
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| Q |
498 |
acactccctttgcacagctaacacatacaccggcaagc |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33864305 |
acactccctttgcacagctaacacatacaccggcaagc |
33864342 |
T |
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