View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16021_low_6 (Length: 335)

Name: NF16021_low_6
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16021_low_6
NF16021_low_6
[»] chr3 (16 HSPs)
chr3 (14-322)||(6749733-6750039)
chr3 (14-322)||(6471701-6472011)
chr3 (114-259)||(6584680-6584820)
chr3 (31-251)||(6418229-6418434)
chr3 (205-292)||(6552075-6552164)
chr3 (182-271)||(6510698-6510785)
chr3 (35-104)||(6510837-6510906)
chr3 (31-104)||(7575857-7575930)
chr3 (211-292)||(8473529-8473614)
chr3 (182-292)||(6822346-6822459)
chr3 (31-98)||(8592574-8592641)
chr3 (114-172)||(6552162-6552220)
chr3 (31-95)||(6823141-6823205)
chr3 (31-71)||(7588675-7588715)
chr3 (232-295)||(6950432-6950497)
chr3 (31-68)||(6950277-6950314)
[»] scaffold0425 (1 HSPs)
scaffold0425 (114-292)||(5025-5190)
[»] scaffold0445 (3 HSPs)
scaffold0445 (31-104)||(8707-8780)
scaffold0445 (182-234)||(8825-8875)
scaffold0445 (124-173)||(8778-8827)
[»] scaffold2089 (1 HSPs)
scaffold2089 (31-70)||(964-1003)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 6749733 - 6750039
Alignment:
Q  14 caaaggaagaatgagatttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaatnnnnnnnnt 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||        |    
T  6749733 caaaggaagaatgagatt-acctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagctgagatctgccaaggaaataaaaaaa-t 6749830  T
Q  114 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6749831 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 6749930  T
Q  214 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaaacttagaggaagcacaagatgtgaaagaagagaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6749931 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaaacttagaggaagcacaagatgtgaaagaagagaaa 6750030  T
Q  314 gtaagaagt 322  Q
    |||||||||    
T  6750031 gtaagaagt 6750039  T

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Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 6472011 - 6471701
Alignment:
Q  14 caaaggaagaatgagatttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaatnnnnnnnnt 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||        |    
T  6472011 caaaggaagaatgagatt-acctgaaagtgtgagaacaaacaaattgagatctttgtctcaagaacacaagctgagatctgccaaggaaataaaaaaa-t 6471914  T
Q  114 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471913 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 6471814  T
Q  214 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaaa----cttagaggaagcacaagatgtgaaagaaga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||||||||||||||||||||||||||||    
T  6471813 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaacgaaagacttttagaggaagcacaagatgtgaaagaaga 6471714  T
Q  310 gaaagtaagaagt 322  Q
    |||||||||||||    
T  6471713 gaaagtaagaagt 6471701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 259
Target Start/End: Complemental strand, 6584820 - 6584680
Alignment:
Q  114 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 213  Q
    ||||||||| ||||||||||||| |||||| |||||| ||||||||| | |||||||||||||||||||||||||||| ||||||| |     ||||| |    
T  6584820 atttagaggaaatataaaatatgccaaatacgaaatttgagtaccaaagtaaattaagaggaagcagtgagtaaaaaacgtgtttagt-----atttaga 6584726  T
Q  214 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaact 259  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||    
T  6584725 gagagaaattacttgaaagtgtgtggaacaaacaaaccgaagaact 6584680  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 6418434 - 6418229
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaatnnnnnnnntatttagaggcaatataa 130  Q
    ||||||||||||||||||||||||| ||||||||||||| |   ||| |||||  | ||||||||||| |||||        ||||||||||||||||||    
T  6418434 ttacctgaaagtgtgagaacaaacagattgagatctttgacagtaaagcacaaacttagatctgccaaggaaatagagaac-tatttagaggcaatataa 6418336  T
Q  131 aatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaagagagaaattacatgaa 230  Q
    ||||||| |||||||||||| ||||| ||| | ||||||||||             ||||||||||||||||  |||| |||||||||||||||| | ||    
T  6418335 aatatgtgaaatatgaaatttgagtaacaatggaaattaagag------------taaaaatgtgtttacta--agatctaaagagagaaattactttaa 6418250  T
Q  231 agtgtgtagaacaaacaaact 251  Q
    ||||||| |||||||||||||    
T  6418249 agtgtgtggaacaaacaaact 6418229  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 6552164 - 6552075
Alignment:
Q  205 agatttaaagagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaa--acttagaggaagca 292  Q
    ||||||||||||| || |||| ||||||||||| |||||||||||||||||||||| | |||||||| ||||||  ||||||||||||||    
T  6552164 agatttaaagagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaagaaatacttagaggaagca 6552075  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 6510785 - 6510698
Alignment:
Q  182 gagtaaaaaatgtgtttactaagagatttaaagagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcc 271  Q
    |||||||||||||||||| |||||  |||||||||||||||||| |||||||| || ||||||||||| |||| ||||| | ||||||||    
T  6510785 gagtaaaaaatgtgtttagtaaga--tttaaagagagaaattacttgaaagtgagtggaacaaacaaagtgaaaaacttgaaagatctcc 6510698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 6510906 - 6510837
Alignment:
Q  35 ctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaat 104  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||  ||||||||||||| |||||    
T  6510906 ctgaaagtgtgagaagaaacaaactgagatctttgtcacaaaaacacaaactgagatctgccaaggaaat 6510837  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 7575857 - 7575930
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| ||  ||||||||| ||| |||||    
T  7575857 ttacctgaaagtgtgagaacaaacaaattgagatctttgtgacaaaaacaaaaactgagatctgacaaggaaat 7575930  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 8473529 - 8473614
Alignment:
Q  211 aaagagagaaattacatgaaagtgtgta--gaacaaacaaactgaagaactttagagatctcctaaagaa--acttagaggaagca 292  Q
    ||||||||||||||| |||||||||||   |||||||||||| |||||||||||||||||||| || |||  ||||||||||||||    
T  8473529 aaagagagaaattacttgaaagtgtgtgtggaacaaacaaaccgaagaactttagagatctcccaaggaaagacttagaggaagca 8473614  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 6822459 - 6822346
Alignment:
Q  182 gagtaaaaaatgtgtttactaaga-gatttaaagagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaa-- 278  Q
    |||||||| ||||||||||||  | |||| ||||||||||||||| ||||||||  | ||| ||||||| |||||||||| | ||||| || ||||||      
T  6822459 gagtaaaatatgtgtttactactaagattcaaagagagaaattacttgaaagtgaatggaagaaacaaagtgaagaacttgaaagatcacccaaagaaag 6822360  T
Q  279 acttagaggaagca 292  Q
    ||||||||||||||    
T  6822359 acttagaggaagca 6822346  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 8592574 - 8592641
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaa 98  Q
    ||||||||||||  ||||||| |||||||||||||||||||  ||||||||||  ||| |||||||||    
T  8592574 ttacctgaaagtcggagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaa 8592641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 6552220 - 6552162
Alignment:
Q  114 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaaga 172  Q
    ||||||||||||||||||| || | |||||||||||| ||||| ||||| |||||||||    
T  6552220 atttagaggcaatataaaaaatatgaaatatgaaatttgagtaacaacggaaattaaga 6552162  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 6823205 - 6823141
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgc 95  Q
    |||||| ||| |||||||||||||||  |||||||||||||  ||||||||||  ||||||||||    
T  6823205 ttacctaaaattgtgagaacaaacaatctgagatctttgtcggaaaaacacaaactgagatctgc 6823141  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 7588675 - 7588715
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtc 71  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  7588675 ttacctgaaagtgtgagaacaaacaaactaagatctttgtc 7588715  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 6950432 - 6950497
Alignment:
Q  232 gtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaa--acttagaggaagcacaa 295  Q
    |||||| ||||||| ||| |||||||||| | |||||||| ||||||  |||||||||||||||||    
T  6950432 gtgtgtggaacaaagaaagtgaagaacttgaaagatctcccaaagaaggacttagaggaagcacaa 6950497  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 6950277 - 6950314
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatcttt 68  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  6950277 ttacctgaaagtgtgagaacaaacaaactaagatcttt 6950314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 292
Target Start/End: Complemental strand, 5190 - 5025
Alignment:
Q  114 atttagaggcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagaggaagcagtgagtaaaaaatgtgtttactaagagatttaaa 213  Q
    ||||||||||||||||||| || | |||||||||||| ||||| ||||| ||||||||||           |||||||||||||||||||||  ||||||    
T  5190 atttagaggcaatataaaaaatatgaaatatgaaatttgagtaacaacggaaattaagag-----------taaaaaatgtgtttactaaga--tttaaa 5104  T
Q  214 gagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatctcctaaagaaacttagaggaagca 292  Q
    |||| || |||| ||||||||||| |||||||||||||||||||||| | |||||||| ||||| ||||||||||||||    
T  5103 gagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaagatacttagaggaagca 5025  T

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Target: scaffold0445 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 8707 - 8780
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagttgagatctgccaaagaaat 104  Q
    |||||||||| ||| |||||||| ||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  8707 ttacctgaaaatgtaagaacaaataaattgagatctttgtcacaaaaacacaaactgagatctgccaaggaaat 8780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 8825 - 8875
Alignment:
Q  182 gagtaaaaaatgtgtttactaagagatttaaagagagaaattacatgaaagtg 234  Q
    |||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  8825 gagtaaaatatgtgtttact--gagatttaaagagagaaattacttgaaagtg 8875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 8778 - 8827
Alignment:
Q  124 aatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagag 173  Q
    ||||||||| |||| |||||||||||| ||||| ||||| ||||||||||    
T  8778 aatataaaaaatgtgaaatatgaaatttgagtaacaacggaaattaagag 8827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 1003 - 964
Alignment:
Q  31 ttacctgaaagtgtgagaacaaacaaattgagatctttgt 70  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  1003 ttacctgaaagtgtgagaacaaacaaactaagatctttgt 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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