View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16021_low_9 (Length: 313)

Name: NF16021_low_9
Description: NF16021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16021_low_9
NF16021_low_9
[»] chr2 (2 HSPs)
chr2 (17-304)||(31482112-31482400)
chr2 (21-49)||(13133088-13133116)
[»] chr3 (2 HSPs)
chr3 (18-49)||(8838525-8838556)
chr3 (21-49)||(55312464-55312492)
[»] chr8 (1 HSPs)
chr8 (21-50)||(19996658-19996687)
[»] chr7 (1 HSPs)
chr7 (27-63)||(37667589-37667625)
[»] chr5 (1 HSPs)
chr5 (21-49)||(26498369-26498397)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 31482400 - 31482112
Alignment:
Q  17 catttaccaccctccaacttgtggggggatattgcaccatgaataaataaaaagagataaaaaggagttaacatttgttgcttgcaatacaagtcattgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  31482400 catttaccaccctccaacttgtggggggatattgcaccatgaacaaataaaa-gagataaaagggagttaacatttgttgcttgcaatacaagtcattgt 31482302  T
Q  117 gtgtggtacggttagagcttagtactagttagttaagagtacattaaaat--gtgtgtgtgtatcagttttacactatacattgaacaatgagaaattat 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31482301 gtgtggtacagttagagcttagtactagttagttaagagtacattaaaatatgtgtgtgtgtatcagttctacactatacattgaacaatgagaaattat 31482202  T
Q  215 cctctttgtttccattctttttatcaatataatcttcgcttctccaattttacctcgattcggtttgcttgccgtttgcacggttcatct 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31482201 cctctttgtttccattctttttatcaatataatcttcacttctgcaattttacctcgattcggtttgctcgccgtttgcacggttcatct 31482112  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 13133088 - 13133116
Alignment:
Q  21 taccaccctccaacttgtggggggatatt 49  Q
    |||||||||||||||||||||||||||||    
T  13133088 taccaccctccaacttgtggggggatatt 13133116  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 8838525 - 8838556
Alignment:
Q  18 atttaccaccctccaacttgtggggggatatt 49  Q
    ||||||||||||||||||||||||||||||||    
T  8838525 atttaccaccctccaacttgtggggggatatt 8838556  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 55312464 - 55312492
Alignment:
Q  21 taccaccctccaacttgtggggggatatt 49  Q
    |||||||||||||||||||||||||||||    
T  55312464 taccaccctccaacttgtggggggatatt 55312492  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 19996658 - 19996687
Alignment:
Q  21 taccaccctccaacttgtggggggatattg 50  Q
    ||||||||||||||||||||||||||||||    
T  19996658 taccaccctccaacttgtggggggatattg 19996687  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 37667589 - 37667625
Alignment:
Q  27 cctccaacttgtggggggatattgcaccatgaataaa 63  Q
    |||||||||||| | ||||||||||||||||||||||    
T  37667589 cctccaacttgtcgagggatattgcaccatgaataaa 37667625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 26498369 - 26498397
Alignment:
Q  21 taccaccctccaacttgtggggggatatt 49  Q
    |||||||||||||||||||||||||||||    
T  26498369 taccaccctccaacttgtggggggatatt 26498397  T

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