View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_high_10 (Length: 365)
Name: NF16022_high_10
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 239341 - 239146
Alignment:
| Q |
155 |
cccttgcatcccttggtgcatatatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatcttt |
254 |
Q |
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| T |
239341 |
cccttgcatcccttggtgcatagatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatcttt |
239242 |
T |
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| Q |
255 |
tttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgtcgatttcttcttgtatat |
350 |
Q |
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| T |
239241 |
tttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgtcgatttcttcttgtatat |
239146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 347
Target Start/End: Complemental strand, 225324 - 225132
Alignment:
| Q |
155 |
cccttgcatcccttggt-gcatatatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatctt |
253 |
Q |
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| T |
225324 |
cccttgcatcc-ttggtcgcatagattatgtacaagatgatgtaaatgagctctacgacgcacccaaaagagttaatggtaataaggagaaattcatctt |
225226 |
T |
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| Q |
254 |
ttttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgtcgatttcttcttgta |
347 |
Q |
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| T |
225225 |
ttttgaggaatgcataatacaaccacagcatggaactgaatagtgccactagataaggtagtgactgaaaaccctctgttgattttttcttgta |
225132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 239484 - 239432
Alignment:
| Q |
13 |
aagcaaaggaccccacattcattgccgaaagtaacttgaaagttaagttctac |
65 |
Q |
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| T |
239484 |
aagcaaaggaccccacattcattgccgaaagtaacttgaaagttaagttctac |
239432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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