View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_low_1 (Length: 875)
Name: NF16022_low_1
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 71 - 856
Target Start/End: Complemental strand, 37616267 - 37615486
Alignment:
| Q |
71 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
170 |
Q |
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| T |
37616267 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
37616168 |
T |
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| Q |
171 |
gaatcacatgttctccatttacattattgttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataccatggt |
270 |
Q |
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| T |
37616167 |
gaatcacatgttctccatttacattatttttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataacatggt |
37616068 |
T |
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| Q |
271 |
ggaaactggaaatcatgtatttcctaggcttgttacgatatctgtaactttttatttatctcctcttgactctccaatcaagtttatcttatacattgat |
370 |
Q |
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| T |
37616067 |
ggaaa-------tcatgtatttcctaggcttgttaccatatctctaactttttatttatctcctcttgactctccaatcaagtttatcttatagattgat |
37615975 |
T |
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| Q |
371 |
caaaagagtagtttgaaagcatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta |
470 |
Q |
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| T |
37615974 |
caaaagagtagttcgaaagtatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta |
37615875 |
T |
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| Q |
471 |
ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatgac---aagcaatgttttgaata |
567 |
Q |
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| T |
37615874 |
ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatgacgtcaagcaatgttttgaata |
37615775 |
T |
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| Q |
568 |
gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc |
667 |
Q |
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| T |
37615774 |
gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc |
37615675 |
T |
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| Q |
668 |
cttgcctttcaaatttactaaactatgatgtagtattgtctcttcaacattcaaatacatatttttatttgatggtcctaacctcaagtgtttggtttaa |
767 |
Q |
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| T |
37615674 |
cttgcctttcaaatttactaaactatgatgtagtattgtctcttcaacattcaaatacatattttgatttgatggtcctaacctcaagtttttggtttaa |
37615575 |
T |
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| Q |
768 |
actacttcaggctttgaagttttgaatgccgaaagcagcaagagatatggatgggaaaaaccaggcgtaaactttatgtatgttttgga |
856 |
Q |
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| T |
37615574 |
actacttcaggctttgaagttttgaatgccgaaagcagcaagagatattgatgggaaaaaccagccgtaaactttatgtatgttttgga |
37615486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37616387 - 37616319
Alignment:
| Q |
1 |
tatttaatgtacgtttcgtatcacggtgagtatatcagaatcaccgcgatccattgtgattttgcaaaa |
69 |
Q |
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| T |
37616387 |
tatttaatgtacgtttaatatcacggtgagtatatcagaatcaccgcgatccatcgtaattttgcaaaa |
37616319 |
T |
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