View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_low_11 (Length: 351)
Name: NF16022_low_11
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 4609872 - 4610187
Alignment:
| Q |
18 |
cataccaaacatgtatatgttaggatccgctgtcagtttggaccgtgattttgtcaaactcaccgccaatctgaatatgcatgaatcaattaacaagtac |
117 |
Q |
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| T |
4609872 |
cataccaaacatgtatatgttaggatccgcagtcagtttggaccgtgattttgtcaaactcaccgccaatctgaatatgcatgaatcaattaacaagtag |
4609971 |
T |
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| Q |
118 |
tgtctaatttgtttgctattatgtttccttttgttacttgcttaggaacgatacgatgaaacaaggagcgaattccacagcaaaagactaccaacatctt |
217 |
Q |
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| T |
4609972 |
tgtctaatttgtttgctattatgtttccttttgttacttgcttaggaacgatacgatgaaacaaggagcgaattccacagcaaaagactaccaacatctt |
4610071 |
T |
|
| Q |
218 |
atgaaacatcattgaatggatatgatgatcaaagtccaaagattgttgaaattgacacatgcaaaactagatcaaaatctaggagattttcctcagcaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4610072 |
atgaaacatcattgaatggatatgatgatcaaagtccaaagattgttgaaattgacacatgcaaaactagatcaaaatctaggagattttcctcagcaat |
4610171 |
T |
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| Q |
318 |
gtctgaatgtggagaa |
333 |
Q |
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|||||||||||||||| |
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| T |
4610172 |
gtctgaatgtggagaa |
4610187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 20960892 - 20960863
Alignment:
| Q |
59 |
accgtgattttgtcaaactcaccgccaatc |
88 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20960892 |
accgtgattttgtcaaactcaccgccaatc |
20960863 |
T |
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