View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16022_low_15 (Length: 301)

Name: NF16022_low_15
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16022_low_15
NF16022_low_15
[»] chr4 (18 HSPs)
chr4 (51-278)||(42741389-42741618)
chr4 (15-54)||(15241478-15241517)
chr4 (15-52)||(2615945-2615982)
chr4 (15-49)||(4549889-4549923)
chr4 (15-53)||(5743659-5743697)
chr4 (15-53)||(30771527-30771565)
chr4 (15-53)||(34273219-34273257)
chr4 (15-53)||(47806859-47806897)
chr4 (15-53)||(52977981-52978019)
chr4 (15-52)||(4035825-4035862)
chr4 (15-52)||(4455060-4455097)
chr4 (15-52)||(5375557-5375594)
chr4 (15-52)||(9328240-9328277)
chr4 (15-52)||(32032993-32033030)
chr4 (15-52)||(33413518-33413555)
chr4 (15-52)||(44294789-44294826)
chr4 (15-52)||(45742806-45742843)
chr4 (16-52)||(26626003-26626039)
[»] chr8 (19 HSPs)
chr8 (15-53)||(36177103-36177141)
chr8 (15-52)||(43654203-43654240)
chr8 (15-55)||(39029175-39029215)
chr8 (15-54)||(51095-51134)
chr8 (15-53)||(1774341-1774379)
chr8 (15-53)||(2944272-2944310)
chr8 (15-53)||(28192175-28192213)
chr8 (15-53)||(37023284-37023322)
chr8 (15-52)||(5774048-5774085)
chr8 (15-52)||(7758909-7758946)
chr8 (15-52)||(8251933-8251970)
chr8 (15-52)||(8951428-8951465)
chr8 (15-52)||(13153928-13153965)
chr8 (15-56)||(18641380-18641421)
chr8 (15-52)||(18754144-18754181)
chr8 (15-52)||(28572046-28572083)
chr8 (15-52)||(28579639-28579676)
chr8 (15-52)||(32675757-32675794)
chr8 (15-52)||(34568490-34568527)
[»] chr7 (20 HSPs)
chr7 (15-52)||(25247690-25247727)
chr7 (15-52)||(34979077-34979114)
chr7 (15-53)||(26255095-26255133)
chr7 (15-53)||(39197717-39197755)
chr7 (15-52)||(6387325-6387362)
chr7 (15-52)||(12930318-12930355)
chr7 (15-52)||(18751982-18752019)
chr7 (15-52)||(19920563-19920600)
chr7 (15-52)||(21295151-21295188)
chr7 (15-52)||(29286037-29286074)
chr7 (15-52)||(32814433-32814470)
chr7 (15-52)||(32872375-32872412)
chr7 (15-52)||(33858866-33858903)
chr7 (15-52)||(36698131-36698168)
chr7 (15-52)||(38858298-38858335)
chr7 (15-52)||(39871613-39871650)
chr7 (16-53)||(40300229-40300266)
chr7 (15-52)||(41026096-41026133)
chr7 (15-52)||(41252361-41252398)
chr7 (15-52)||(48521029-48521066)
[»] chr5 (12 HSPs)
chr5 (15-52)||(15190815-15190852)
chr5 (15-53)||(1265948-1265986)
chr5 (15-52)||(3686754-3686791)
chr5 (15-52)||(6673228-6673265)
chr5 (16-53)||(7951561-7951598)
chr5 (15-52)||(9828393-9828430)
chr5 (15-52)||(14913648-14913685)
chr5 (15-52)||(16127259-16127296)
chr5 (15-52)||(22527692-22527729)
chr5 (15-52)||(26894873-26894910)
chr5 (15-52)||(40004409-40004446)
chr5 (16-52)||(34662204-34662240)
[»] chr3 (20 HSPs)
chr3 (15-52)||(26221288-26221325)
chr3 (15-56)||(26593765-26593806)
chr3 (16-54)||(4024050-4024088)
chr3 (15-53)||(10220932-10220970)
chr3 (15-53)||(14428609-14428647)
chr3 (15-53)||(21756485-21756523)
chr3 (15-53)||(30041017-30041055)
chr3 (15-53)||(46049986-46050024)
chr3 (15-52)||(7181350-7181387)
chr3 (15-52)||(9499497-9499534)
chr3 (15-52)||(12050392-12050429)
chr3 (15-52)||(22103929-22103966)
chr3 (15-52)||(25149122-25149159)
chr3 (15-52)||(35868083-35868120)
chr3 (15-52)||(37728713-37728750)
chr3 (15-52)||(43868103-43868140)
chr3 (15-52)||(44543782-44543819)
chr3 (15-52)||(45252773-45252810)
chr3 (15-52)||(51284062-51284099)
chr3 (19-59)||(33868712-33868752)
[»] chr2 (22 HSPs)
chr2 (15-54)||(8716892-8716931)
chr2 (15-53)||(2438224-2438262)
chr2 (15-53)||(7491843-7491881)
chr2 (15-53)||(16108475-16108513)
chr2 (15-53)||(27560205-27560243)
chr2 (19-53)||(29239332-29239366)
chr2 (19-52)||(1360055-1360088)
chr2 (15-52)||(11201683-11201720)
chr2 (15-52)||(11865289-11865326)
chr2 (15-52)||(13197645-13197682)
chr2 (15-52)||(17408294-17408331)
chr2 (15-52)||(20252210-20252247)
chr2 (15-52)||(26334845-26334882)
chr2 (15-52)||(34062665-34062702)
chr2 (15-52)||(34883848-34883885)
chr2 (15-52)||(36131028-36131065)
chr2 (15-52)||(38121511-38121548)
chr2 (15-52)||(40607702-40607739)
chr2 (15-52)||(41450516-41450553)
chr2 (20-52)||(8841397-8841429)
chr2 (18-54)||(40789091-40789127)
chr2 (19-55)||(45474348-45474384)
[»] chr6 (6 HSPs)
chr6 (15-53)||(231105-231143)
chr6 (15-53)||(34301832-34301870)
chr6 (15-52)||(4844400-4844437)
chr6 (15-52)||(7772176-7772213)
chr6 (15-52)||(8743188-8743225)
chr6 (15-52)||(30248647-30248684)
[»] chr1 (26 HSPs)
chr1 (15-53)||(943637-943675)
chr1 (15-53)||(15811232-15811270)
chr1 (18-52)||(16576095-16576129)
chr1 (15-53)||(30290264-30290302)
chr1 (15-53)||(39363194-39363232)
chr1 (15-53)||(44649628-44649666)
chr1 (15-53)||(49907020-49907058)
chr1 (15-52)||(1039381-1039418)
chr1 (15-52)||(1046287-1046324)
chr1 (15-52)||(4102714-4102751)
chr1 (19-52)||(7784258-7784291)
chr1 (15-52)||(11741397-11741434)
chr1 (15-56)||(16456632-16456673)
chr1 (15-52)||(18237094-18237131)
chr1 (15-52)||(23541979-23542016)
chr1 (19-52)||(30289602-30289635)
chr1 (15-52)||(36694854-36694891)
chr1 (15-52)||(36710955-36710992)
chr1 (15-52)||(37951949-37951986)
chr1 (15-52)||(39497433-39497470)
chr1 (15-52)||(45039412-45039449)
chr1 (15-52)||(46075867-46075904)
chr1 (15-52)||(50007975-50008012)
chr1 (15-52)||(52431174-52431211)
chr1 (15-51)||(30289862-30289898)
chr1 (15-47)||(45285810-45285842)
[»] scaffold0604 (1 HSPs)
scaffold0604 (15-52)||(3782-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (15-52)||(12065-12102)
[»] scaffold0107 (1 HSPs)
scaffold0107 (15-56)||(48650-48691)
[»] scaffold0029 (1 HSPs)
scaffold0029 (15-52)||(51682-51719)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-52)||(47640-47677)
[»] scaffold0008 (1 HSPs)
scaffold0008 (15-52)||(259122-259159)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 278
Target Start/End: Original strand, 42741389 - 42741618
Alignment:
Q  51 taacatgttgtcaaagccttttaacaacatagcctttatacaacatttttcaaatgttattaaaacaaatcaattatttcttttctata--taatttagc 148  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  42741389 taacatgttgtgaaagccgtttaacaacatagcctttttacaacatttttcaaatgttattaaaacaaatcaactatttcttttctatatataatttagc 42741488  T
Q  149 aatattgttctaattattaatatgttataggaatatattggatgtaggtgtctaaatattatttttcatcatgaaacataacgactcatcatactatttt 248  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42741489 aatattgttctaatgattaatatgttataggaatatattgtatgtaggtatctaaatattatttttaatcatgaaacataacgactcatcatactatttt 42741588  T
Q  249 atcttattcatttgatttcactcaccataa 278  Q
    ||||||||||||||||||||||||||||||    
T  42741589 atcttattcatttgatttcactcaccataa 42741618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 15241517 - 15241478
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaac 54  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagtaac 15241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 2615945 - 2615982
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2615945 ttctcaaaagggtcttatgattagggacggagggagta 2615982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 4549889 - 4549923
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggaggga 49  Q
    |||||||||||||||||| ||||||||||||||||    
T  4549889 ttctcaaaagagtcttataattagggacggaggga 4549923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 5743659 - 5743697
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  5743659 ttctcaaaagggtcttataattagggacggagggagtaa 5743697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 30771565 - 30771527
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagtaa 30771527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 34273219 - 34273257
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  34273219 ttctcaaaagggtcttataattagggacggagggagtaa 34273257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 47806897 - 47806859
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  47806897 ttctcaaaagggtcttataattagggacggagggagtaa 47806859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 52978019 - 52977981
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  52978019 ttctcaaaagggtcttataattagggacggagggagtaa 52977981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4035862 - 4035825
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  4035862 ttctcaaaagggtcttataattagggacggagggagta 4035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4455097 - 4455060
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  4455097 ttctcaaaagagtcttataattagggacggatggagta 4455060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 5375557 - 5375594
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  5375557 ttctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9328240 - 9328277
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  9328240 ttctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 32032993 - 32033030
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 44294826 - 44294789
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  44294826 ttctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 45742806 - 45742843
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  45742806 ttctcaaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 26626003 - 26626039
Alignment:
Q  16 tctcaaaagagtcttatgattagggacggagggagta 52  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  26626003 tctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 36177103 - 36177141
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36177103 ttctcaaaagagtcttataattagggacggagggagtaa 36177141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 43654203 - 43654240
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43654203 ttctcaaaagagtcttataattagggacggagggagta 43654240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 39029215 - 39029175
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaaca 55  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  39029215 ttctcaaaagggtcttataattagggacggagggagtaaca 39029175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 51095 - 51134
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaac 54  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  51095 ttctcaaaagggtcttataattagggacggagggagtaac 51134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 1774379 - 1774341
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagtaa 1774341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 2944272 - 2944310
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  2944272 ttctcaaaagggtcttataattagggacggagggagtaa 2944310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 28192175 - 28192213
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  28192175 ttctcaaaagggtcttataattagggacggagggagtaa 28192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 37023284 - 37023322
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  37023284 ttctcaaaagagtcttataattagggacggaggcagtaa 37023322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 5774085 - 5774048
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  5774085 ttctcaaaagagtcttataattagggacggaggtagta 5774048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 7758909 - 7758946
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  7758909 ttctcaaaagtgtcttataattagggacggagggagta 7758946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8251933 - 8251970
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  8251933 ttctcaaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8951428 - 8951465
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  8951428 ttctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 13153965 - 13153928
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  13153965 ttctcaaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 18641380 - 18641421
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaacat 56  Q
    |||||||||| ||||||| |||||||||||||| ||||||||    
T  18641380 ttctcaaaagggtcttataattagggacggaggtagtaacat 18641421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 18754181 - 18754144
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagta 18754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 28572083 - 28572046
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 28579676 - 28579639
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 32675757 - 32675794
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  32675757 ttctcaaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 34568527 - 34568490
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 25247690 - 25247727
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25247690 ttctcaaaagagtcttataattagggacggagggagta 25247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 34979077 - 34979114
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  34979077 ttctcaaaagagtcttataattagggacggagggagta 34979114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 26255133 - 26255095
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagtaa 26255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 39197755 - 39197717
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  39197755 ttctcaaaagggtcttataattagggacggagggagtaa 39197717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 6387362 - 6387325
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  6387362 ttctcaaaagagtcttataattagagacggagggagta 6387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 12930355 - 12930318
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  12930355 ttctcaaaagagtcttataattagggacggaggtagta 12930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 18751982 - 18752019
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  18751982 ttctcaaaagagtcttataattagggacggaggtagta 18752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 19920600 - 19920563
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  19920600 ttctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 21295188 - 21295151
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  21295188 ttctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 29286037 - 29286074
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  29286037 ttctcaaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 32814470 - 32814433
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  32814470 ttctcaaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 32872375 - 32872412
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  32872375 ttctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 33858866 - 33858903
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  33858866 ttctcaaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36698131 - 36698168
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 38858335 - 38858298
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  38858335 ttctcaaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 39871613 - 39871650
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  39871613 ttctcaaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 40300266 - 40300229
Alignment:
Q  16 tctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  40300266 tctcaaaagggtcttataattagggacggagggagtaa 40300229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 41026096 - 41026133
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  41026096 ttctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 41252361 - 41252398
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  41252361 ttctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 15190815 - 15190852
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  15190815 ttctcaaaagagtcttataattagggacggagggagta 15190852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 1265986 - 1265948
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  1265986 ttctcaaaagggtcttataattagggacggagggagtaa 1265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 3686754 - 3686791
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  3686754 ttctcaaaagagtcttataattagggacggaaggagta 3686791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 6673228 - 6673265
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7951598 - 7951561
Alignment:
Q  16 tctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  7951598 tctcaaaagggtcttataattagggacggagggagtaa 7951561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 9828430 - 9828393
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  9828430 ttctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 14913685 - 14913648
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 16127296 - 16127259
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  16127296 ttctcaaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 22527729 - 22527692
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  22527729 ttctcaaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 26894873 - 26894910
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagta 26894910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 40004409 - 40004446
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  40004409 ttctcaaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 34662240 - 34662204
Alignment:
Q  16 tctcaaaagagtcttatgattagggacggagggagta 52  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  34662240 tctcaaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 26221325 - 26221288
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  26221325 ttctcaaaagagtcttataattagggacggagggagta 26221288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26593765 - 26593806
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaacat 56  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  26593765 ttctcaaaagggtcttataattagggacggagggagtaacat 26593806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4024088 - 4024050
Alignment:
Q  16 tctcaaaagagtcttatgattagggacggagggagtaac 54  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  4024088 tctcaaaagggtcttataattagggacggagggagtaac 4024050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 10220970 - 10220932
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagtaa 10220932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 14428647 - 14428609
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagtaa 14428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 21756523 - 21756485
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagtaa 21756485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30041017 - 30041055
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  30041017 ttctcaaaagagtcttataattaggaacggagggagtaa 30041055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 46049986 - 46050024
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  46049986 ttctcaaaagggtcttataattagggacggagggagtaa 46050024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7181387 - 7181350
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  7181387 ttctcaaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9499497 - 9499534
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  9499497 ttctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 12050392 - 12050429
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 22103929 - 22103966
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  22103929 ttctcaaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 25149122 - 25149159
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  25149122 ttctcaaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 35868083 - 35868120
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  35868083 ttctcaaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 37728750 - 37728713
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  37728750 ttctcaaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 43868140 - 43868103
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 44543819 - 44543782
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  44543819 ttctcaaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 45252810 - 45252773
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  45252810 ttctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 51284062 - 51284099
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 33868712 - 33868752
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagtaacatgtt 59  Q
    |||||| ||||||| ||||||||||||||||||| ||||||    
T  33868712 caaaagggtcttataattagggacggagggagtatcatgtt 33868752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 8716892 - 8716931
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaac 54  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  8716892 ttctcaaaagggtcttataattagggacggagggagtaac 8716931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 2438262 - 2438224
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  2438262 ttctcaaaagggtcttataattagggacggagggagtaa 2438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 7491881 - 7491843
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  7491881 ttctcaaaagggtcttataattagggacggagggagtaa 7491843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 16108475 - 16108513
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  16108475 ttctcaaaagaatcttataattagggacggagggagtaa 16108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 27560243 - 27560205
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  27560243 ttctcaaaagggtcttataattagggacggagggagtaa 27560205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 29239366 - 29239332
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  29239366 caaaagagtcttataattagggacggagggagtaa 29239332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 1360055 - 1360088
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||| |||||||||||||||||||    
T  1360055 caaaagagtcttataattagggacggagggagta 1360088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 11201720 - 11201683
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 11865289 - 11865326
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  11865289 ttctcaaaagagtcttataattagggacggaggtagta 11865326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 13197645 - 13197682
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  13197645 ttctcaaaagaatcttataattagggacggagggagta 13197682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 17408294 - 17408331
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  17408294 ttctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 20252247 - 20252210
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  20252247 ttctcaaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 26334845 - 26334882
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  26334845 ttctcaaaagagtcttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 34062665 - 34062702
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 34883848 - 34883885
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  34883848 ttctcaaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36131028 - 36131065
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36131028 ttctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 38121511 - 38121548
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  38121511 ttctcaaaagagtcttattattagggacggaggtagta 38121548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 40607739 - 40607702
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  40607739 ttctcaaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 41450553 - 41450516
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  41450553 ttctcaaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 8841429 - 8841397
Alignment:
Q  20 aaaagagtcttatgattagggacggagggagta 52  Q
    ||||||||||||| |||||||||||||||||||    
T  8841429 aaaagagtcttataattagggacggagggagta 8841397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 40789091 - 40789127
Alignment:
Q  18 tcaaaagagtcttatgattagggacggagggagtaac 54  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  40789091 tcaaaagagtcttataattagggacggaggtagtaac 40789127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 45474384 - 45474348
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagtaaca 55  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  45474384 caaaagggtcttataattagggacggagggagtaaca 45474348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 231105 - 231143
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagtaa 231143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 34301832 - 34301870
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  34301832 ttctcaaaagggtcttataattagggacggagggagtaa 34301870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4844437 - 4844400
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7772213 - 7772176
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  7772213 ttctcaaaagagtcttataattagggacggaggtagta 7772176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 8743225 - 8743188
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  8743225 ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 30248684 - 30248647
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  30248684 ttctcaaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 943637 - 943675
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagtaa 943675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 15811232 - 15811270
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  15811232 ttctcaaaagggtcttataattagggacggagggagtaa 15811270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 16576095 - 16576129
Alignment:
Q  18 tcaaaagagtcttatgattagggacggagggagta 52  Q
    ||||||||||||||| |||||||||||||||||||    
T  16576095 tcaaaagagtcttataattagggacggagggagta 16576129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 30290302 - 30290264
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  30290302 ttctcaaaagggtcttataattagggacggagggagtaa 30290264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 39363194 - 39363232
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  39363194 ttctcaaaagggtcttataattagggacggagggagtaa 39363232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 44649666 - 44649628
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  44649666 ttctcaaaagggtcttataattagggacggagggagtaa 44649628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 49907058 - 49907020
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaa 53  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  49907058 ttctcaaaagggtcttataattagggacggagggagtaa 49907020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 1039381 - 1039418
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  1039381 ttctcaaaagggtcttataattagggacggagggagta 1039418  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 1046287 - 1046324
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  1046287 ttctcaaaagggtcttataattagggacggagggagta 1046324  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 4102714 - 4102751
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  4102714 ttctcaaaagggtcttataattagggacggagggagta 4102751  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 7784258 - 7784291
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||| |||||||||||||||||||    
T  7784258 caaaagagtcttataattagggacggagggagta 7784291  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 11741434 - 11741397
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  11741434 ttctcaaaagggtcttataattagggacggagggagta 11741397  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 16456673 - 16456632
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaacat 56  Q
    |||||| ||| ||||||| |||||||||||||||||||||||    
T  16456673 ttctcagaagggtcttataattagggacggagggagtaacat 16456632  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 18237131 - 18237094
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  18237131 ttctcaaaagagtcttataattagggacggaggtagta 18237094  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 23542016 - 23541979
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  23542016 ttctcaaaagggtcttataattagggacggagggagta 23541979  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 30289635 - 30289602
Alignment:
Q  19 caaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||| |||||||||||||||||||    
T  30289635 caaaagagtcttataattagggacggagggagta 30289602  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 36694891 - 36694854
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36694891 ttctcaaaagggtcttataattagggacggagggagta 36694854  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 36710992 - 36710955
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36710992 ttctcaaaagggtcttataattagggacggagggagta 36710955  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 37951949 - 37951986
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  37951949 ttctcaaaagggtcttataattagggacggagggagta 37951986  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 39497470 - 39497433
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  39497470 ttctcaaaagggtcttataattagggacggagggagta 39497433  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 45039449 - 45039412
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  45039449 ttctcaaaagggtcttataattagggacggagggagta 45039412  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 46075867 - 46075904
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  46075867 ttctcaaaagggtcttataattagggacggagggagta 46075904  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 50008012 - 50007975
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  50008012 ttctcaaaagagtcttataattagggacagagggagta 50007975  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 52431174 - 52431211
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  52431174 ttctcaaaagggtcttataattagggacggagggagta 52431211  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 30289862 - 30289898
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagt 51  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  30289862 ttctcaaaagggtcttataattagggacggagggagt 30289898  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 45285810 - 45285842
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagg 47  Q
    |||||||||||||||||| ||||||||||||||    
T  45285810 ttctcaaaagagtcttataattagggacggagg 45285842  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 3782 - 3819
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  3782 ttctcaaaagggtcttataattagggacggagggagta 3819  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 12102 - 12065
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagta 12065  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 48691 - 48650
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagtaacat 56  Q
    |||||||||| ||||||| |||||||||||||| ||||||||    
T  48691 ttctcaaaagggtcttataattagggacggaggtagtaacat 48650  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 51682 - 51719
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  51682 ttctcaaaagggtcttataattagggacggagggagta 51719  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 47677 - 47640
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagta 47640  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 259122 - 259159
Alignment:
Q  15 ttctcaaaagagtcttatgattagggacggagggagta 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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