View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16022_low_17 (Length: 274)
Name: NF16022_low_17
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_17 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 46263226 - 46263489
Alignment:
| Q |
11 |
atcatcacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtattaaatcacgaacaacgtcgcagcacaatctttgatataa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46263226 |
atcaccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtattaaatcacgaacaacgtcgcagcacaatctttgatataa |
46263325 |
T |
|
| Q |
111 |
tggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatcaaaaaagattaatgttgcagtcgtttgtgtatcttat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46263326 |
tggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatcaagaaagattaatgttgcagtcgtttgtgtatcttat |
46263425 |
T |
|
| Q |
211 |
tttaaaaacttcccaaagatatacacaatacagggatcgatgaaaatatgaaaaatcttatgac |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46263426 |
tttaaaaacttcccaaagatatacacaatacaaggatcgatgaaaatatgaaaaatcttatgac |
46263489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 46024965 - 46024699
Alignment:
| Q |
11 |
atcatcacaagaaaagaagagttacatatgtaaaggaaaagaatacacttatattaggtattaaatcacgaacaacgtcgcagcacaatctttgatataa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46024965 |
atcaccacaagaaaagaagagttacatatgtaaaggaaaagaatacacttgtattaggtattaaatcacgaacaacgtcgcagcacaatctttgatataa |
46024866 |
T |
|
| Q |
111 |
tg---gattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatcaaaaaagattaatgttgcagtcgtttgtgtatct |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46024865 |
tgatggattactgataatatgaccataatcttgcccagattgcagtcctgaagtcgtgaagacatcaaaaaagattaatgttgcagtcgtttgtgtatct |
46024766 |
T |
|
| Q |
208 |
tattttaaaaacttcccaaagatatacacaatacagggatcgatgaaaatatgaaaaatcttatgac |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46024765 |
tattttaaaaacttcccaaagatatacacaatacaaggatcgatgaaaatatgaaaaatcttatgac |
46024699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University