View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_low_19 (Length: 267)
Name: NF16022_low_19
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 14333667 - 14333436
Alignment:
| Q |
17 |
aatattgtgtaaaatttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaa |
116 |
Q |
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| T |
14333667 |
aatattgtgtaaaatttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaa |
14333568 |
T |
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| Q |
117 |
gaactaaaccggactgtggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaaaaactgctgctagaag |
216 |
Q |
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| T |
14333567 |
gaactaaaccggactgtggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaaaaactgctgctagaag |
14333468 |
T |
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| Q |
217 |
aatcgaacggagaacgcgatcatagatgtacc |
248 |
Q |
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| T |
14333467 |
aatcgaacggagaacgcgatcatagatgtacc |
14333436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 53088965 - 53088774
Alignment:
| Q |
17 |
aatattgtgtaaaatttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaa |
116 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53088965 |
aatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtggatgttccatgcattgtttaaa |
53088866 |
T |
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| Q |
117 |
gaactaaaccggactg---------tggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaa |
200 |
Q |
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| T |
53088865 |
aaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaacc-ggcggatcaatacatggaccaggctaa |
53088774 |
T |
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