View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_low_2 (Length: 713)
Name: NF16022_low_2
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 702
Target Start/End: Complemental strand, 51106539 - 51105856
Alignment:
| Q |
19 |
actacgcgcttcagtgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaaaagatcgtagtggcca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
51106539 |
actacgcgcttcagtgggctgcactcaacaaccaaacttctgttgctaagtacatcattgatcatggtggagatataaatgcaaaagatcgtagtggcta |
51106440 |
T |
|
| Q |
119 |
gacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtat |
218 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106439 |
gacagcattgcattggagtgccgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtat |
51106340 |
T |
|
| Q |
219 |
cagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106339 |
cagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaa |
51106240 |
T |
|
| Q |
319 |
gaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatcgggggcgtattgataaagaaggctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106239 |
gaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatcgggggcgtattgataaagaaggctt |
51106140 |
T |
|
| Q |
419 |
cactcctctccattgggctgctattaaaggtaacttgcaggcatgtattctattagtacatgctggaaaaaataaaggcctagtggtgaccgacaatact |
518 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51106139 |
cactgctctccattgggctgctattaaaggtaacttgcaggcatgtattctattagtacatgctggaaaaaataaagacctagtggtgaccgacaatact |
51106040 |
T |
|
| Q |
519 |
ggctttacaccggtgcagcttgcttctgataagaatcacagagaaattgnnnnnnnncttgaaaattaccagaggcgtcttgaaagacgcttagactctg |
618 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106039 |
ggccttacaccggtgcagcttgcttctgataagaatcacagagaaattgttttttttcttgaaaattaccagaggcgtcttgaaagacgcttagactctg |
51105940 |
T |
|
| Q |
619 |
acagcccgcttggaaatatatacaagttattcatgaatgctattagtaaacccatcatttccaaacaccgattcaacacttcat |
702 |
Q |
| |
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| T |
51105939 |
acagcccgcttggaaatatatacaagttattcatgaatgctattagtaaacccatcatttccaaacaccgattcaacacttcat |
51105856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 28 - 460
Target Start/End: Complemental strand, 51115866 - 51115434
Alignment:
| Q |
28 |
ttcagtgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcatt |
127 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||| |||| |||||||| |||||| || ||||| |
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| T |
51115866 |
ttcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaacggcatt |
51115767 |
T |
|
| Q |
128 |
gcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaata |
227 |
Q |
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|||||||||||| || || |||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |
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| T |
51115766 |
gcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaattgaattctgctgacaagtatgggtatcagacaaca |
51115667 |
T |
|
| Q |
228 |
catgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccat |
327 |
Q |
| |
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|||||||| |||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||| | |
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| T |
51115666 |
catgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgttcctgataatgaaggaagaagcccct |
51115567 |
T |
|
| Q |
328 |
tgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatcgggggcgtattgataaagaaggcttcactcctct |
427 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||| |||||| |||| | ||||||||||| | |||||||| |
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| T |
51115566 |
tgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgattcacatcgagggcatcaggataaagaaggttggactcctct |
51115467 |
T |
|
| Q |
428 |
ccattgggctgctattaaaggtaacttgcaggc |
460 |
Q |
| |
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|||| ||||||||| |||||||||||| |||| |
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| T |
51115466 |
ccatatggctgctatgaaaggtaacttggaggc |
51115434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 48033760 - 48033900
Alignment:
| Q |
81 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
180 |
Q |
| |
|
|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
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| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
|
| Q |
181 |
agggtgctcaattgaattctgctgacaaggatgggtatcag |
221 |
Q |
| |
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||||||||| | |||| ||||||||| | ||||||||||| |
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| T |
48033860 |
agggtgctcgagtgaacgctgctgacatgaatgggtatcag |
48033900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 48034113 - 48034221
Alignment:
| Q |
227 |
acatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagccca |
326 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||| | || ||||||||||||||||||||||||| | || |||||| ||||||||| |||| |
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| T |
48034113 |
acatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaagatgcccc |
48034212 |
T |
|
| Q |
327 |
ttgcattgg |
335 |
Q |
| |
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||||||||| |
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| T |
48034213 |
ttgcattgg |
48034221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 48035932 - 48035999
Alignment:
| Q |
334 |
gggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatcgggggcgt |
401 |
Q |
| |
|
||||||||| |||||||||| |||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatgcacatcgggggcgt |
48035999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 560
Target Start/End: Original strand, 48036144 - 48036285
Alignment:
| Q |
419 |
cactcctctccattgggctgctattaaaggtaacttgcaggcatgtattctattagtacatgctggaaaaaataaaggcctagtggtgaccgacaatact |
518 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||| |||| | |||||||| ||||| ||||| ||| ||| || ||||| || | || | |
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| T |
48036144 |
cactcctctccattgggctgctatgcgaggtaacttggaggcctgtaccgtgttagtacaggctggcaaaaaggaagacctggtagtgactgatattagt |
48036243 |
T |
|
| Q |
519 |
ggctttacaccggtgcagcttgcttctgataagaatcacaga |
560 |
Q |
| |
|
||| |||| || | || ||||||||||||| ||| |||||| |
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|
| T |
48036244 |
ggccttacgccagctcaacttgcttctgataggaaacacaga |
48036285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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