View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16022_low_3 (Length: 635)
Name: NF16022_low_3
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 28439170 - 28439785
Alignment:
| Q |
1 |
taattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatattgttggaatgtacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439170 |
taattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatattgttggaatgtacaaa |
28439269 |
T |
|
| Q |
101 |
atcaaactcaacaaattgagattcacattggcatgataaatgtttgtgattcaagcacttgaacatggaaagactatagaagcaaagaaagtgttgcagc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439270 |
atcaaactcaacaaattgagattcacattggcatgataaatgtttgtgattcaagcacttgaacatggaaagactatagaagcaaagaaagtgttgcagc |
28439369 |
T |
|
| Q |
201 |
agaaatataagcctatctacgatagctgattgtaaagtgcaaattggagccagttctaaaactatctaaaaaaccatgtttcagtgcttatttttcacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439370 |
agaaatataagcctatctacgatagctgattgtaaagtgcaaattggagccagttctaaaactatctaaaaaaccatgtttcagtgcttatttttcacct |
28439469 |
T |
|
| Q |
301 |
tccaaagagcttaagtttccagaggcccaaatctgcattcaaaattgaaaagttaagccaatccaaacaaccctacaggaaaacagccttatttcctctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439470 |
tccaaagagcttaagtttccagaggcccaaatctgcattcaaaattgaaaagttaagccaatccaaacaaccctacaggaaaacagccttatttcctctt |
28439569 |
T |
|
| Q |
401 |
gaatcaataaattgaaaagttattagttttacttacgtagcttaaatcaataaactgatatctgacaagttgcagatgccctctgagaagagaatatttc |
500 |
Q |
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| T |
28439570 |
gaatcaataaattgaaaagttattagttttacttacgtagcttaaatcaataaactgatatctgacaagttgcagatgccctctgagaagagaatatttc |
28439669 |
T |
|
| Q |
501 |
atcttcaattagaactttgtttatagcactcgagctccaaatactcatggtgtttaaaacacctgcattgtttagaatgaatttggaaaaacttatgtcc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439670 |
atcttcaattagaactttgtttatagcactcgagctccaaatactcatggtgtttaaaacacctgcattgtttagaatgaatttggaaaaacttatgtcc |
28439769 |
T |
|
| Q |
601 |
cgctttaggtccatag |
616 |
Q |
| |
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|||||||||||||||| |
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| T |
28439770 |
cgctttaggtccatag |
28439785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 1023563 - 1023668
Alignment:
| Q |
157 |
acttgaacatggaaagactatagaagcaa-agaaagtgttgcagcagaaatata-agcctatctacgatagctgattgtaaagtgcaaattggagccagt |
254 |
Q |
| |
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|||||||| |||| |||||| ||||||| | ||| |||| |||||||||||| || |||||| |||| |||||||||||||||||||||||| ||| |
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| T |
1023563 |
acttgaaccaggaatgactatggaagcaagaaaaactgttacagcagaaatatttagattatctatgataaatgattgtaaagtgcaaattggagcaagt |
1023662 |
T |
|
| Q |
255 |
tctaaa |
260 |
Q |
| |
|
|||||| |
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|
| T |
1023663 |
tctaaa |
1023668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 1047117 - 1047023
Alignment:
| Q |
167 |
ggaaagactatagaagcaaaga-aagtgttgcagcagaaatata-agcctatctacgatagctgattgtaaagtgcaaattggagccagttctaa |
259 |
Q |
| |
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||||||||||| ||||||| | || |||| ||||||||||||| ||| ||| || ||||| |||||| |||||||||||||||| |||||||| |
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| T |
1047117 |
ggaaagactatggaagcaagaacaaatgttacagcagaaatatatagcttatgtatgataggtgattgcaaagtgcaaattggagtaagttctaa |
1047023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 35821316 - 35821360
Alignment:
| Q |
214 |
tatctacgatagctgattgtaaagtgcaaattggagccagttcta |
258 |
Q |
| |
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|||||| ||| | |||||||||||||||||||||||| ||||||| |
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| T |
35821316 |
tatctatgattgatgattgtaaagtgcaaattggagcaagttcta |
35821360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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