View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16022_low_4 (Length: 584)
Name: NF16022_low_4
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_4 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 30)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 24913309 - 24912753
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24913309 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcattattcttgtgaagatttccattagcataatcccatagct |
24913210 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataaatctta |
216 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24913209 |
gtacacatctcctttcacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataaagctta |
24913110 |
T |
|
| Q |
217 |
gacacattaattactaatataacatgctgattactgatgtgtgtgtcgtagannnnnnnnnn---gttaacaaaatcaaatagattggttaggactcaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24913109 |
gacacattaattactaatataacatgttgattacagatgtttgtgtcgtagattttttttgttttgttaacaaaatcaaatagattggttaggactcaaa |
24913010 |
T |
|
| Q |
314 |
acgcagaataaaatgttacttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatcca |
413 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
24913009 |
acacagaataaaatgttacgtaaagagaagaa-tgacctggtgcaaggtatccaacagtagctaaagtctgtgtatgagttttagattgtccttcatcca |
24912911 |
T |
|
| Q |
414 |
tgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaaga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912910 |
tgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaaga |
24912811 |
T |
|
| Q |
514 |
accatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912810 |
accaagatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
24912753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 25490023 - 25490588
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25490023 |
atgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggttttctccttgtaaagatttccattagcataatcccatagct |
25490122 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaa--taaatct |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| | |||| ||||||| ||||||| ||| || |
|
|
| T |
25490123 |
gtacacatctcctttgacagaaacaattcctttagatccatactctgcatgttaatactagttattacgagttatcaaatatttttaaaaaattaaggct |
25490222 |
T |
|
| Q |
215 |
taga-------------cacattaattactaatataacatgctgattactgatgtgtgtgtcgtagannnnnnnnnngttaacaaaatcaaatagattgg |
301 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||| | ||||| |||| ||| ||| ||||||||||||||| |
|
|
| T |
25490223 |
tagatccatactgtctacacattaattactaatataacatgttgatgactaacgtgtga----tagatttttgtt--gttgacataatcaaatagattgg |
25490316 |
T |
|
| Q |
302 |
ttaggactcaaaac--gcagaataaaatgttacttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgaga |
399 |
Q |
| |
|
|| ||||| ||| | ||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25490317 |
ttgggactgtaaatatgaagaggaaaatgttaagtaaaaaaaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagttttaga |
25490416 |
T |
|
| Q |
400 |
ttgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaacc |
499 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25490417 |
ttgtccttcatccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaacc |
25490516 |
T |
|
| Q |
500 |
acaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25490517 |
acaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
25490588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 25695183 - 25695751
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25695183 |
atgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagct |
25695282 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaa---atattcttaaaa-ataaat |
212 |
Q |
| |
|
| ||||||||||||| |||||||||||||| |||| |||||||||||| |||| || |||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
25695283 |
gaacacgtctcctttcacagaaacaattcctctagaaccatactctgcatgttaataatagttactactatttataaataaatattcttaaaaaataaag |
25695382 |
T |
|
| Q |
213 |
cttag-------------acacattaattactaatataacatgctgattactgatgtgtgtgtcgtagannnnnnnnnngttaacaaaatcaaatagatt |
299 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||| ||| | ||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
25695383 |
cttagatccatactgtgtacacatcaattactaatataacatgttgatgactaacgtgtga----tagatttttgtt--gttgacataatcaaatagatt |
25695476 |
T |
|
| Q |
300 |
ggttaggactcaaaac--gcagaataaaatgttacttaaa-gagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttg |
396 |
Q |
| |
|
|||| ||||| ||| | ||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695477 |
ggttgggactgtaaatatgaagaggaaaatgttaagtaaaagaaaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttt |
25695576 |
T |
|
| Q |
397 |
agattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatga |
496 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695577 |
agattgtccttcatccatcagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatga |
25695676 |
T |
|
| Q |
497 |
accacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695677 |
accactggtattgaggaaccatgatggagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
25695751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 25715016 - 25715584
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25715016 |
atgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccatagct |
25715115 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataaatctta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| | |||| ||||||||||||| ||| |||| |
|
|
| T |
25715116 |
gtacacgtctcctttgacagaaacaattcctctagaaccatactctgcatgttaagtctagttattaccagttatcaaatattcttaaagttaaggctta |
25715215 |
T |
|
| Q |
217 |
ga-------------cacattaattactaatataacatgctgattactgatgtgtgtgtcgtagannnnnnnnnngttaacaaaatcaaatagattggtt |
303 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| ||| | ||||||| ||||| ||| ||||||| | ||||||||||| |
|
|
| T |
25715216 |
gatccatacaatgtacacattaattactaatataacatgttgatgactaa--tgtgtgttgtaga--tattttttgttgacaaaataatatagattggtt |
25715311 |
T |
|
| Q |
304 |
aggactcaaa-acgcagaataaaatgtt----acttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgag |
398 |
Q |
| |
|
||||| ||| | | || | |||||| | | ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25715312 |
gggactgaaacataaacaagataatgttaagaagtaaaagagaagaaatgacctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgag |
25715411 |
T |
|
| Q |
399 |
attgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaac |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25715412 |
attgtccttcatccatgagctttgcaataccaaaatcgctaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaac |
25715511 |
T |
|
| Q |
499 |
cacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25715512 |
cactggtattgaagaaccacgatggagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
25715584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 283 - 571
Target Start/End: Original strand, 25453079 - 25453373
Alignment:
| Q |
283 |
acaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagtagcc |
376 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||| ||||||||| | |||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
25453079 |
acaaaatcaaatagattggttaggactgaaaacataaagaagaaaatgttatgaagtaaaagagaataaatgacctggtgcaaggtatccaatagtagct |
25453178 |
T |
|
| Q |
377 |
aaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
476 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25453179 |
aaagtttgtgtgtaagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgcaaccatattttcatccaacaagacattag |
25453278 |
T |
|
| Q |
477 |
aaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453279 |
aaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
25453373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 335 - 570
Target Start/End: Original strand, 25322811 - 25323046
Alignment:
| Q |
335 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
434 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25322811 |
aaagagaagaaatgacctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaat |
25322910 |
T |
|
| Q |
435 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaa |
534 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25322911 |
cgctaacatgtgcaaccatatttttatccaataagacattggaaggctttagatcacaatgaaccacaggtattgaagaaccatgatgaagatattccaa |
25323010 |
T |
|
| Q |
535 |
tgcagatgcaacatctatcattatatttaacctttg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25323011 |
tgcagatgcaacatctatcattatatttaacctttg |
25323046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 335 - 570
Target Start/End: Original strand, 25685802 - 25686037
Alignment:
| Q |
335 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
434 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
25685802 |
aaagagaagaaatgacctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccaggagcttggcaataccaaaat |
25685901 |
T |
|
| Q |
435 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaa |
534 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25685902 |
cgctaacatgtgcaaccatattttcatccaacaagacattcgaaggctttagatcgcaatgaaccacaggtattgaagaaccatgatgaagatattccaa |
25686001 |
T |
|
| Q |
535 |
tgcagatgcaacatctatcattatatttaacctttg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25686002 |
tgcagatgcaacatctatcattatatttaacctttg |
25686037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 335 - 570
Target Start/End: Original strand, 25604792 - 25605027
Alignment:
| Q |
335 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
434 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25604792 |
aaagataagaaatgacctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaat |
25604891 |
T |
|
| Q |
435 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaa |
534 |
Q |
| |
|
| ||||||||||| |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25604892 |
cgctaacatgtgctaccatatttttatccaataagacatttgaaggctttagatctcaatgaaccacaggtattgaagaaccatgatgaagatattccaa |
25604991 |
T |
|
| Q |
535 |
tgcagatgcaacatctatcattatatttaacctttg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25604992 |
tgcagatgcaacatctatcattatatttaacctttg |
25605027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 333 - 571
Target Start/End: Original strand, 25341133 - 25341371
Alignment:
| Q |
333 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
432 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25341133 |
ttaaagagaagaaatgacctggtgcaaggtatccaatagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaa |
25341232 |
T |
|
| Q |
433 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattcc |
532 |
Q |
| |
|
||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||| |
|
|
| T |
25341233 |
atcgcttacatgtgcaaccatattttcatccaataagacattagaaggctttagatcgcaatgaaccactggtactgaagaaccatgatggagatattcc |
25341332 |
T |
|
| Q |
533 |
aatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25341333 |
aatgcagatgcaacatctatcattatatttaacctttgc |
25341371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 335 - 571
Target Start/End: Original strand, 23258359 - 23258595
Alignment:
| Q |
335 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
434 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23258359 |
aaagagaacaaattacctggtgcaaggtatccaagagtagctaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgaaataccaaaat |
23258458 |
T |
|
| Q |
435 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaa |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
23258459 |
cactaacatgtgcaaccatattttcatccaacaagacattagaaggttttagatcgcaatgaaccacgggtattgaagaaccatgatggagatattccaa |
23258558 |
T |
|
| Q |
535 |
tgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258559 |
tgcagatgcaacatctatcattatatttaacctttgc |
23258595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 333 - 571
Target Start/End: Original strand, 25570039 - 25570277
Alignment:
| Q |
333 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
432 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| ||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
25570039 |
ttaatgagaagaaatgacttggtgcaaggtatccaatagtagctaaagtctgtgtatgagttttagattgaccttcatccatgagcttagcaataccaaa |
25570138 |
T |
|
| Q |
433 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattcc |
532 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25570139 |
atcactaacacgtgcaaccatattttcatccaacatgacattggagggctttagatcacagtgaaccacaggcattgaagaaccatgatgaagatatttc |
25570238 |
T |
|
| Q |
533 |
aatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25570239 |
aatgcagatgcaacatctatcattatatttaacctttgc |
25570277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 339 - 570
Target Start/End: Original strand, 25800437 - 25800668
Alignment:
| Q |
339 |
agaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcact |
438 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
25800437 |
agaagaaattacctggtgcaagatatccaacagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaaatcgct |
25800536 |
T |
|
| Q |
439 |
aacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgca |
538 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| | |||| |
|
|
| T |
25800537 |
tacatgtgcaaccatattttcatccaataagacattagaaggctttagatcgcaatgaaccactggtattgaagaaccatgatggagatattctactgca |
25800636 |
T |
|
| Q |
539 |
gatgcaacatctatcattatatttaacctttg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25800637 |
gatgcaacatctatcattatatttaacctttg |
25800668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 283 - 571
Target Start/End: Original strand, 25647109 - 25647403
Alignment:
| Q |
283 |
acaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagtagcc |
376 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||| | ||| ||||||||| | ||| ||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
25647109 |
acaaaatcaaataaattggttatgactgaaaacgtaaagaagaaaatgttaagaagtaaaacagaagaaatgacctggtgcaagatatccaatagtagcc |
25647208 |
T |
|
| Q |
377 |
aaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattgg |
476 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25647209 |
aaagtctgtgtatgagttttagattgtccttcacccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacatttg |
25647308 |
T |
|
| Q |
477 |
aaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||| || |||||||| || ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
25647309 |
aaggctttagatctcattgaaccactggtattgatgaaccatgatggagatattccaattctgatgcaacatctatcattatatttaacctttgc |
25647403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 279 - 571
Target Start/End: Original strand, 25475754 - 25476052
Alignment:
| Q |
279 |
gttaacaaaatcaaatagattggttaggactcaaaacgca--gaataaaatgttac----ttaaagagaagaaatgacctggtgcgaggtatccaacagt |
372 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || || | ||| |||||||||| | ||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
25475754 |
gttaacagaatcaaatagattggttgggactaaagacataaagaagaaaatgttacaaagtaaaagagaagaaatgacctggtgcaatgtatccaatagt |
25475853 |
T |
|
| Q |
373 |
agccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagaca |
472 |
Q |
| |
|
|| |||||||||||||| || |||| | |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
25475854 |
aggaaaagtttgtgtatggcatttagatcggccttcatcgatgagcttggcaataccaaaatcactaacatgtgcaaccatatttttatccaacatgaca |
25475953 |
T |
|
| Q |
473 |
ttggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25475954 |
ttagaaggctttagatcgcaatgaaccacaggtattgaagaaccatgatggagatattccaatgcagatgcaacatctatcattatattcaacctttgc |
25476052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 341 - 571
Target Start/End: Complemental strand, 22900709 - 22900479
Alignment:
| Q |
341 |
aagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaa |
440 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22900709 |
aagaaattacctggtgcaagatatccaatagtagccaaagtctctgtatgagttttagattgtccttcatccatgagtttggcaataccaaaatcactaa |
22900610 |
T |
|
| Q |
441 |
catgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcaga |
540 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
22900609 |
catgtgcaaccatatcttcgtccagcaagacattactaggctttagatcacaatggaccacaggtattgaagaaccatgatggagatattccaatgcata |
22900510 |
T |
|
| Q |
541 |
tgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22900509 |
tgcaacatctatcattatatttaacctttgc |
22900479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 333 - 513
Target Start/End: Complemental strand, 24875337 - 24875157
Alignment:
| Q |
333 |
ttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaa |
432 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24875337 |
ttaaagagaagaaatgacttggtgcaaggtatccaatagtagccaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgcaataccaaa |
24875238 |
T |
|
| Q |
433 |
atcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaaga |
513 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
24875237 |
atcgctaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccactggtattgaaga |
24875157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 24875658 - 24875468
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24875658 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcctttttcttgtgaagatttccattagcataatcccatagct |
24875559 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataa |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| || || || |||||||||||||| ||||||||||||| |||| |
|
|
| T |
24875558 |
gtacacatctcctttgacagaaacaattcctttagatccatactctgcatgt---taatatttattactatttatcaaatattcttaaacataa |
24875468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 25685470 - 25685658
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
25685470 |
atgatccaatgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaaaatttccattagcataatcccatagct |
25685569 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaa |
205 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||| | |||| ||||||||||||| |
|
|
| T |
25685570 |
gtacacatctcctttgaccgaaacaattcctttagatccatactctgcatgttaagtctagttattaccagttatcaaatattcttaaa |
25685658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 25800109 - 25800273
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
25800109 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattaacatgatcccatagct |
25800208 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttat |
181 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
25800209 |
gtacacatctcctttgacggaaacaattcctttagatccatactctgcatgttaatactagttat |
25800273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 25340822 - 25341012
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
25340822 |
atgatccactgatccatgtcttcaagtttagttcagcaacaaacatatcatctgttggctttcttcttgtgaagatttccattaacatgatcccatagct |
25340921 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataa |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||| ||||||||||||| |||| |
|
|
| T |
25340922 |
gtacacatctcctttgacagaaacaattcccttagatccatactctgca---tcttaatatttattactatttatcaaatattcttaaacataa |
25341012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 25322486 - 25322667
Alignment:
| Q |
24 |
actgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctgtacacg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
25322486 |
actgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtgaagatttccattatcattatcccatagctgtacacg |
25322585 |
T |
|
| Q |
124 |
tctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaa |
205 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||| |||| |||||| ||||| |
|
|
| T |
25322586 |
tctcctttgacagaaacaattcctctagaaccatactctgcatgttaagtctagttattactagttatcgaatattattaaa |
25322667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 25452814 - 25452978
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
25452814 |
atgatccactgatccatgtcttcaggcttagttctggaacaaacatatcatctgttggctttcttcttgtaaagatttccattaacatgatcccatagct |
25452913 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttat |
181 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
25452914 |
gtacacatctcctttgacggaaacaattcctttagatccatactctgcatgttaatactagttat |
25452978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 25475098 - 25475246
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25475098 |
atgatccattgatccatgtcttcaattttagttctgcaacaaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccatagct |
25475197 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgca |
165 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25475198 |
gtacacatctcctttcacagaaacaattcctttagatccatactctgca |
25475246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 25646865 - 25647031
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||| ||||||||||||||||||||| | |
|
|
| T |
25646865 |
atgatctactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggctttctccttgtaaagatttccattagcataatcccatagtt |
25646964 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttatta |
183 |
Q |
| |
|
|||||| |||||||| |||||||||||||| || ||||||||||||||| |||| |||||||||||| |
|
|
| T |
25646965 |
gtacacatctcctttcacagaaacaattcctttcgatccatactctgcatgttaatactagttatta |
25647031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 25604460 - 25604648
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||| |||||||||||||| |||||||| |
|
|
| T |
25604460 |
atgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggctttctctttgtaaagatttccattagcataattccatagct |
25604559 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaa |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||| | || ||||||||||||| |
|
|
| T |
25604560 |
gtacacatctcctttgacagaaacaattcctctagaaccatactctgcatgttaagcctagttattactagtaatcaaatattcttaaa |
25604648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #26
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 25569729 - 25569919
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25569729 |
atgattcactgatccatgtcttcaaacttagttctgcaacaaatatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagct |
25569828 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattcttaaaaataa |
210 |
Q |
| |
|
||| | |||||||| ||||||||||| ||||||| |||| |||||||| || || || ||| |||||| ||| ||||||||||||| |||| |
|
|
| T |
25569829 |
gtaaatatctcctttcacagaaacaatccccttagttccacactctgcatgt---taatatttactactatatatcaaatattcttaaatataa |
25569919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #27
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 23257759 - 23257912
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23257759 |
atgatccatcgatccatgtcttcaaacttagttcttcaacgaacatatcatctgttggctttctccttgtgaagatttccattagcataatcccatagct |
23257858 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
170 |
Q |
| |
|
||| || |||||||||||||||| | ||||||| ||||||||||||||| |||| |
|
|
| T |
23257859 |
gtatacatctcctttgacagaaatagttccctttgatccatactctgcatgtta |
23257912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #28
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 22901377 - 22901224
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||| ||||||||||||||||||| |||| ||| | |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22901377 |
atgattcactgatccatgtcttcaaagttaggtcttctacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccatagct |
22901278 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
170 |
Q |
| |
|
||| || |||||||||| |||||||||||| |||| ||| ||||||||| |||| |
|
|
| T |
22901277 |
gtatacatctcctttgatagaaacaattcctttagttccgtactctgcatgtta |
22901224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #29
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 25385880 - 25385937
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttgg |
74 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25385880 |
atgatcgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttgg |
25385937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Complemental strand, 24875159 - 24875126
Alignment:
| Q |
538 |
agatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
24875159 |
agatgcagcatctatcattatatttaacctttgc |
24875126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 17296 - 16713
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
17296 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccatagct |
17197 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtacta-------------gt---tattactatttataaaatattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
17196 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtattacataaattttcttgtgaatattactatttataaaatattc |
17097 |
T |
|
| Q |
201 |
ttaaaaataaatcttagac-------------acattaattactaatataacatgctgattactgatgtgtgtgtcgtagannnnnnnnnn-gttaacaa |
286 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
17096 |
ttaaaaataaagcttagacccataccatgtacacattaattactaatataacatgttgattactgatgtgtgtgtcgtagatttttttttttgttaacaa |
16997 |
T |
|
| Q |
287 |
aatcaaatagattggttaggactcaaaacgcagaataaaatgttacttaaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtg |
386 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
16996 |
aatcaaatagattggttaggacttaaaactcagaataaaatgttacttaaagagaagaa-tgacctggtgcaaggtatccaacagtagctaaagtctgtg |
16898 |
T |
|
| Q |
387 |
tatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttag |
486 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16897 |
tatgagttttagattgaccttcatccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttag |
16798 |
T |
|
| Q |
487 |
atcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16797 |
atcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacttctatcattatatttaacctttgc |
16713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 335 - 567
Target Start/End: Original strand, 10324008 - 10324240
Alignment:
| Q |
335 |
aaagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaat |
434 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10324008 |
aaagagaagaaatgacctggtgcaaggtatccaatagtagctaaagtctgtgtatgagtttttgattgtccttcatccatgagcttggcaataccaaaat |
10324107 |
T |
|
| Q |
435 |
cactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaa |
534 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
10324108 |
cgctaacatgtgcaaccatattttcatccaacaagacattagaaggctttagatcacaatgaaccacgggtattgaagaaccatgatggagatattccaa |
10324207 |
T |
|
| Q |
535 |
tgcagatgcaacatctatcattatatttaacct |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10324208 |
tgcagatgcaacatctatcattatatttaacct |
10324240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 10323690 - 10323843
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10323690 |
atgatccactgatccatgtcttcaagcttagttctgcagcaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagct |
10323789 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagtta |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
10323790 |
gtacacgtctcctttgacagaaacaattcctttagatccatactctgcatgtta |
10323843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 336 - 571
Target Start/End: Complemental strand, 4434 - 4199
Alignment:
| Q |
336 |
aagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatc |
435 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||| | ||| |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4434 |
aagaaaagaaattacctggtgcaaggtatccgatagttgccaaagtttgtgtatgagttttagaatgtccttcgtccatgagcttggcaataccaaaatc |
4335 |
T |
|
| Q |
436 |
actaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaat |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4334 |
actaacatgtgcaaccatattttcatccaacaagacatttgaaggctttagatctcaatgaaccacaggtattgaagaaccatgatgtagatattccaat |
4235 |
T |
|
| Q |
536 |
gcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4234 |
gctgatgcaacatctatcattatatttaacctttgc |
4199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 4746 - 4563
Alignment:
| Q |
17 |
atgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagct |
116 |
Q |
| |
|
||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4746 |
atgattcattgatccatgatttcaaacttagttctgcaacaaacatatcatctgttggctttcttctggtgaagatttccattagcataatcccatagct |
4647 |
T |
|
| Q |
117 |
gtacacgtctcctttgacagaaacaattcccttagatccatactctgcaagttagtactagttattactatttataaaatattc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||| ||| |||||||| |
|
|
| T |
4646 |
gtacacatctcctttgacagaaacaattcctttagatccatactctgcatttaaatactagttattactagctatcaaatattc |
4563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 336 - 559
Target Start/End: Original strand, 5079906 - 5080129
Alignment:
| Q |
336 |
aagagaagaaatgacctggtgcgaggtatccaacagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatc |
435 |
Q |
| |
|
|||||||||||| ||||||||| | || |||| ||||| ||||| || ||||||| || ||||||||| ||||||| |||||||| ||| |||||||| |
|
|
| T |
5079906 |
aagagaagaaattacctggtgcaacataaccaattgtagctaaagtctgagtatgagctttagattgtccatcatccaagagctttgaaatcccaaaatc |
5080005 |
T |
|
| Q |
436 |
actaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaat |
535 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||| | ||||||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
5080006 |
actaacatgtgcaaccatattttcatccagtaacacattgctaggcttcaaatcacaatgaaccactggtattgaagaaccatgatgaagatactccaat |
5080105 |
T |
|
| Q |
536 |
gcagatgcaacatctatcattata |
559 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
5080106 |
gcagatgccacatctatcattata |
5080129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 385 - 571
Target Start/End: Complemental strand, 5119578 - 5119392
Alignment:
| Q |
385 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
484 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |
|
|
| T |
5119578 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactaacatgtgcaaccatatcttcatccagcaacacattactaggcttc |
5119479 |
T |
|
| Q |
485 |
agatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
5119478 |
aaatcacaatgaaccactggtattgaagaaccatgatgaagatactccaatgcagatgccacatctatcattatgttcaacctttgc |
5119392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 385 - 571
Target Start/End: Complemental strand, 5102019 - 5101833
Alignment:
| Q |
385 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
484 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||||| | |||||| |
|
|
| T |
5102019 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactaacatgtgcaatcatattttcatccaataacacattagcaggcttc |
5101920 |
T |
|
| Q |
485 |
agatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
| |||||||||||||| || ||| ||||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||||||| |
|
|
| T |
5101919 |
aagtcacaatgaaccactggtattaaagaaccatgatggagatactccaatgctgatgccacatctatcattatgttcaacctttgc |
5101833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 5079681 - 5079825
Alignment:
| Q |
18 |
tgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctg |
117 |
Q |
| |
|
|||| |||| ||||| || |||||| ||| |||| | ||||||| |||||||||||||| |||| ||||||||| ||||||||||| || ||| |||| |
|
|
| T |
5079681 |
tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttctttcctgtgaagatttccattagcattattccaaagcta |
5079780 |
T |
|
| Q |
118 |
tacacgtctcctttgacagaaacaattcccttagatccatactct |
162 |
Q |
| |
|
||||| |||||||| || |||| | ||||||||||||||||||| |
|
|
| T |
5079781 |
tacacatctcctttaactgaaattactcccttagatccatactct |
5079825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 5120198 - 5120092
Alignment:
| Q |
57 |
aaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatcca |
156 |
Q |
| |
|
|||||| |||| ||||||||| |||| ||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| || ||| |||||||| |
|
|
| T |
5120198 |
aaacatttcatttgttggcttctttccggtgaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgatccccctagatcca |
5120099 |
T |
|
| Q |
157 |
tactctg |
163 |
Q |
| |
|
||||||| |
|
|
| T |
5120098 |
tactctg |
5120092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 5102573 - 5102467
Alignment:
| Q |
57 |
aaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatcca |
156 |
Q |
| |
|
|||||| |||| ||||||| | |||| ||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| ||||| |||||||| |
|
|
| T |
5102573 |
aaacatttcatttgttggcatctttccggtgaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgattccgctagatcca |
5102474 |
T |
|
| Q |
157 |
tactctg |
163 |
Q |
| |
|
||||||| |
|
|
| T |
5102473 |
tactctg |
5102467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 401 - 571
Target Start/End: Complemental strand, 16886284 - 16886114
Alignment:
| Q |
401 |
tgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggctttagatcacaatgaacca |
500 |
Q |
| |
|
||||||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||||||| | || ||||| |||||| | |||||||||||||| |
|
|
| T |
16886284 |
tgtccttcatccaagagcttagaaattccaaaatcactgacatgtgcaaccatattttcatctagtaacacattactaggcttcaaatcacaatgaacca |
16886185 |
T |
|
| Q |
501 |
caggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16886184 |
ctggtattgaagaaccatgatggagatactccaatgcagatgcaacatctatcattatattcaacctttgc |
16886114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 16886836 - 16886728
Alignment:
| Q |
55 |
acaaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatc |
154 |
Q |
| |
|
|||||||| |||| ||||||||| |||| ||||||||| ||||||||||| | ||||| |||||||| |||||||| | ||||| | ||||||||||| |
|
|
| T |
16886836 |
acaaacatttcatttgttggcttctttcctgtgaagatttccattagcattactccataactgtacacatctcctttaatagaaatgactcccttagatc |
16886737 |
T |
|
| Q |
155 |
catactctg |
163 |
Q |
| |
|
||||||||| |
|
|
| T |
16886736 |
catactctg |
16886728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 385 - 571
Target Start/End: Original strand, 14412266 - 14412452
Alignment:
| Q |
385 |
tgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacattggaaggcttt |
484 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||||| |||| |||||| | || ||||| |||||| |
|
|
| T |
14412266 |
tgtatgagtttttgattgtccttcatccaagagcttggaaatgccaaaatcactcacatgtgcaatcatagcttcatctagtaacacattactaggcttc |
14412365 |
T |
|
| Q |
485 |
agatcacaatgaaccacaggcattgaagaaccatgatgaagatattccaatgcagatgcaacatctatcattatatttaacctttgc |
571 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
14412366 |
aagtcacaatgaaccactggtattgaagaaccatgatggagatactccaatgcagatgccacatctatcattatgttcaacctttgc |
14412452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 14411927 - 14412033
Alignment:
| Q |
57 |
aaacatatcatctgttggcttttttcttgtgaagatctccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatcca |
156 |
Q |
| |
|
|||||| |||| ||||||||| |||| ||||| | ||||||||||| ||||||||||||||||| |||||||| ||||||| | ||| ||||||||| |
|
|
| T |
14411927 |
aaacatttcatttgttggcttctttccggtgaacagttccattagcattatcccatagctgtacacatctcctttaacagaaatgactcctttagatcca |
14412026 |
T |
|
| Q |
157 |
tactctg |
163 |
Q |
| |
|
||||||| |
|
|
| T |
14412027 |
tactctg |
14412033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University