View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16022_low_5 (Length: 575)

Name: NF16022_low_5
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16022_low_5
NF16022_low_5
[»] chr6 (18 HSPs)
chr6 (182-558)||(17149071-17149446)
chr6 (318-558)||(17166717-17166957)
chr6 (248-558)||(17135290-17135594)
chr6 (14-145)||(17149542-17149658)
chr6 (79-145)||(9208296-9208363)
chr6 (71-123)||(6691531-6691583)
chr6 (71-123)||(9583409-9583461)
chr6 (86-137)||(11448922-11448974)
chr6 (83-137)||(10377763-10377817)
chr6 (79-121)||(28028581-28028623)
chr6 (85-137)||(15360192-15360245)
chr6 (86-137)||(654240-654292)
chr6 (86-137)||(3222729-3222781)
chr6 (86-137)||(5360165-5360217)
chr6 (83-119)||(11306158-11306194)
chr6 (86-137)||(12390476-12390528)
chr6 (83-119)||(17328248-17328284)
chr6 (71-103)||(28741970-28742002)
[»] chr2 (20 HSPs)
chr2 (79-137)||(19605940-19605998)
chr2 (71-181)||(28194178-28194294)
chr2 (71-136)||(8192447-8192512)
chr2 (73-137)||(30943134-30943198)
chr2 (80-137)||(19525491-19525548)
chr2 (86-137)||(30466924-30466976)
chr2 (71-105)||(6099517-6099551)
chr2 (71-105)||(26482136-26482170)
chr2 (85-119)||(29996444-29996478)
chr2 (85-137)||(3943790-3943843)
chr2 (82-119)||(13803550-13803587)
chr2 (72-137)||(26176292-26176357)
chr2 (86-119)||(33569842-33569875)
chr2 (86-118)||(9318060-9318092)
chr2 (83-119)||(9776360-9776396)
chr2 (88-136)||(10324948-10324996)
chr2 (86-137)||(10582084-10582136)
chr2 (71-123)||(16525221-16525273)
chr2 (86-137)||(17324817-17324869)
chr2 (81-137)||(36179922-36179978)
[»] chr7 (24 HSPs)
chr7 (71-133)||(3951089-3951151)
chr7 (71-137)||(23330834-23330900)
chr7 (71-137)||(28647009-28647075)
chr7 (82-119)||(13106766-13106803)
chr7 (82-119)||(17113850-17113887)
chr7 (86-137)||(11997904-11997956)
chr7 (86-137)||(21217927-21217979)
chr7 (71-123)||(22696360-22696412)
chr7 (85-123)||(22638346-22638384)
chr7 (85-137)||(654798-654851)
chr7 (85-137)||(2751325-2751378)
chr7 (82-119)||(21558183-21558220)
chr7 (82-119)||(26459394-26459431)
chr7 (82-119)||(43215239-43215276)
chr7 (81-137)||(1469162-1469218)
chr7 (86-137)||(7175956-7176008)
chr7 (86-137)||(7275332-7275384)
chr7 (79-139)||(11910047-11910107)
chr7 (86-137)||(17212108-17212160)
chr7 (86-137)||(22119943-22119995)
chr7 (86-137)||(29861725-29861777)
chr7 (81-137)||(36173085-36173141)
chr7 (86-137)||(40543004-40543056)
chr7 (86-137)||(41907607-41907659)
[»] chr5 (10 HSPs)
chr5 (79-137)||(19145506-19145564)
chr5 (71-105)||(16172982-16173016)
chr5 (71-137)||(36895461-36895527)
chr5 (79-133)||(40330677-40330731)
chr5 (71-108)||(8780514-8780551)
chr5 (82-119)||(14285216-14285253)
chr5 (86-119)||(16773866-16773899)
chr5 (71-103)||(15485420-15485452)
chr5 (86-137)||(27498825-27498877)
chr5 (86-137)||(38684259-38684311)
[»] chr1 (30 HSPs)
chr1 (80-137)||(25237084-25237141)
chr1 (71-137)||(1138615-1138681)
chr1 (79-137)||(32729589-32729647)
chr1 (86-137)||(7766821-7766873)
chr1 (86-137)||(8077698-8077750)
chr1 (86-137)||(9500449-9500501)
chr1 (86-137)||(15059496-15059548)
chr1 (85-137)||(19034481-19034533)
chr1 (86-137)||(23734167-23734219)
chr1 (86-137)||(23741359-23741411)
chr1 (71-123)||(39964548-39964600)
chr1 (86-137)||(7197341-7197392)
chr1 (71-137)||(24217014-24217080)
chr1 (80-137)||(1486463-1486520)
chr1 (82-119)||(2799917-2799954)
chr1 (84-137)||(16539657-16539710)
chr1 (86-123)||(18646904-18646941)
chr1 (86-123)||(27454975-27455012)
chr1 (82-119)||(29753704-29753741)
chr1 (82-119)||(33700757-33700794)
chr1 (82-119)||(36371525-36371562)
chr1 (89-118)||(43927568-43927597)
chr1 (85-137)||(46607860-46607913)
chr1 (86-137)||(4621331-4621383)
chr1 (37-73)||(6471690-6471726)
chr1 (89-137)||(16899557-16899605)
chr1 (86-137)||(24122074-24122126)
chr1 (86-137)||(24674444-24674496)
chr1 (83-119)||(40810523-40810559)
chr1 (86-137)||(45859137-45859189)
[»] scaffold0020 (1 HSPs)
scaffold0020 (79-181)||(123105-123204)
[»] chr4 (23 HSPs)
chr4 (70-181)||(13017764-13017870)
chr4 (70-137)||(24273257-24273324)
chr4 (81-119)||(10048034-10048072)
chr4 (71-127)||(29195138-29195194)
chr4 (86-137)||(34844852-34844904)
chr4 (86-137)||(40058946-40058998)
chr4 (86-137)||(49287909-49287961)
chr4 (72-123)||(3392774-3392825)
chr4 (87-137)||(5609296-5609347)
chr4 (86-137)||(22630281-22630332)
chr4 (71-105)||(37980146-37980180)
chr4 (36-70)||(39288883-39288917)
chr4 (71-105)||(56409994-56410028)
chr4 (86-123)||(19660641-19660678)
chr4 (85-137)||(25852264-25852317)
chr4 (93-137)||(32942428-32942473)
chr4 (82-119)||(37109335-37109372)
chr4 (82-119)||(37274443-37274480)
chr4 (86-137)||(9517735-9517787)
chr4 (35-67)||(12710195-12710227)
chr4 (86-137)||(27528889-27528941)
chr4 (86-137)||(33992677-33992729)
chr4 (86-137)||(43719159-43719211)
[»] scaffold0012 (1 HSPs)
scaffold0012 (37-70)||(240903-240936)
[»] chr8 (16 HSPs)
chr8 (71-136)||(33585723-33585788)
chr8 (80-137)||(6953101-6953159)
chr8 (70-136)||(18128552-18128618)
chr8 (79-137)||(26168943-26169001)
chr8 (70-119)||(33017256-33017306)
chr8 (71-137)||(34639302-34639367)
chr8 (79-137)||(36094732-36094790)
chr8 (71-112)||(1372521-1372562)
chr8 (85-137)||(3734717-3734770)
chr8 (82-119)||(18540353-18540390)
chr8 (81-137)||(3403597-3403653)
chr8 (86-137)||(4718700-4718752)
chr8 (86-137)||(15259500-15259552)
chr8 (83-119)||(31843845-31843881)
chr8 (86-137)||(34237749-34237801)
chr8 (86-137)||(39349311-39349363)
[»] chr3 (23 HSPs)
chr3 (82-119)||(8796077-8796114)
chr3 (71-123)||(40777056-40777108)
chr3 (70-137)||(30695344-30695411)
chr3 (71-113)||(39253740-39253783)
chr3 (91-137)||(1178228-1178274)
chr3 (85-123)||(7485634-7485672)
chr3 (71-137)||(26158854-26158920)
chr3 (88-137)||(53234004-53234054)
chr3 (71-121)||(53863850-53863900)
chr3 (86-119)||(10445123-10445156)
chr3 (86-123)||(24407312-24407349)
chr3 (71-119)||(28703388-28703437)
chr3 (85-137)||(51532839-51532892)
chr3 (86-137)||(8456244-8456296)
chr3 (71-123)||(11092150-11092202)
chr3 (79-123)||(15034396-15034440)
chr3 (86-137)||(26108343-26108395)
chr3 (86-137)||(30807247-30807299)
chr3 (71-123)||(31766727-31766779)
chr3 (71-103)||(34844414-34844446)
chr3 (86-137)||(35492962-35493014)
chr3 (79-123)||(40268540-40268584)
chr3 (35-67)||(50583008-50583040)
[»] scaffold0160 (1 HSPs)
scaffold0160 (70-137)||(29237-29304)
[»] scaffold0576 (1 HSPs)
scaffold0576 (85-137)||(5176-5229)
[»] scaffold0238 (1 HSPs)
scaffold0238 (82-119)||(2695-2732)
[»] scaffold0199 (1 HSPs)
scaffold0199 (86-131)||(8508-8553)
[»] scaffold0180 (1 HSPs)
scaffold0180 (82-119)||(19946-19983)
[»] scaffold0026 (1 HSPs)
scaffold0026 (85-137)||(97460-97513)
[»] scaffold0070 (1 HSPs)
scaffold0070 (86-137)||(40376-40428)
[»] scaffold0019 (1 HSPs)
scaffold0019 (86-137)||(161860-161912)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 182 - 558
Target Start/End: Complemental strand, 17149446 - 17149071
Alignment:
Q  182 atcataggcatctaaacttttattctgnnnnnnnnttagaatttaaaatgaaataagatcctgtaggatgttgattttgattatatagttttccatatat 281  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  17149446 atcataggcatctaaacttttattct-aaaaaaaattagaatttaaaatgaaataagatcttataggatgttgattttgattatatagttttccatatat 17149348  T
Q  282 ttttctcaatgcttcaactaattattgattgatgatttgattctaatgccttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagca 381  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17149347 ttttctcaatgcttcaactaattcttcattgatgatttgattctaatgccttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagca 17149248  T
Q  382 tccaaatactctttcttggtggcaatgtcacagtctcttctcattggaaccattttcatgactgttattttcttgagtaaagaaaagtttgcattcatct 481  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17149247 tccaagtactctttcttggtgacaatgtctcagtctcttctcattggaaccattttcatgactgttattttcttgagtaaagaaaagtttgcattcatct 17149148  T
Q  482 ttaccaacagtgatgatttgatacatgctgcaagtgaattagcataccttcttggtataaccatggttatcaacagt 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17149147 ttaccaacagtgatgatttgatacatgctgcaagtgaattagcataccttcttggtataaccatggttatcaacagt 17149071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 318 - 558
Target Start/End: Complemental strand, 17166957 - 17166717
Alignment:
Q  318 ttgattctaatgccttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagcatccaaatactctttcttggtggcaatgtcacagtct 417  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||     
T  17166957 ttgattctaatgtcttgcaagtgttcgtgtctctaatacacttggcatgtcacatccaagagcagccaaatactctttcttggtggcaatatctcagtcc 17166858  T
Q  418 cttctcattggaaccattttcatgactgttattttcttgagtaaagaaaagtttgcattcatctttaccaacagtgatgatttgatacatgctgcaagtg 517  Q
    |||||| |||||| ||||||||||||||||||||||||  | |||||||| ||||| |||||||||||||| ||||||||| | ||||||||||||||||    
T  17166857 cttctccttggaatcattttcatgactgttattttcttatgcaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtg 17166758  T
Q  518 aattagcataccttcttggtataaccatggttatcaacagt 558  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  17166757 aattagcttaccttcttggtatgacaatggttatcaacagt 17166717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 248 - 558
Target Start/End: Complemental strand, 17135594 - 17135290
Alignment:
Q  248 gatgttgattttgattatatagttttccatata--tttttctcaatgcttcaactaattattgattgatgatttgattctaatgccttgcaagtgttcgt 345  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||||  |||| | |||  ||||||        ||||||| |||||||||||||||    
T  17135594 gatgttgattttgattatatagttttccatataattttttttcaatgctcaaactgactatatattgat--------tctaatgtcttgcaagtgttcgt 17135503  T
Q  346 gtctctaatacacttggcatgtcacatccaagagcatccaaatactctttcttggtggcaatgtcacagtctcttctcattggaaccattttcatgactg 445  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||    
T  17135502 gtctctcatacacttggaatgtcgcatccaagagcatccaaatactctttcttggtagcaatgtctcagtctcttctcattggaatcattttcatgactg 17135403  T
Q  446 ttattttcttgagtaaagaaaagtttgcattcatctttaccaacagtgatgatttgatacatgctgcaagtgaattagcataccttcttggtataaccat 545  Q
    ||||||||||||| ||| || | |||||   |||||||||||| ||||  ||| ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  17135402 ttattttcttgagcaaacaagaatttgccaccatctttaccaaaagtgtggatatgatacatgctgctagtgaattagcatattttcttggtataaccat 17135303  T
Q  546 ggttatcaacagt 558  Q
    |||| ||||||||    
T  17135302 ggttctcaacagt 17135290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 17149658 - 17149542
Alignment:
Q  14 cataggcatctaaaactcatttggttggtttgggatcttggagtatgctcctctcaaagtgtgcccctctcaaggtctcaggttcgattctctctgatgc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                ||||||||||||||||| ||||| |||    
T  17149658 cataggcatctaaaactcatttggttggtttgggatcttggagtgtgctcctctcaa----------------ggtctcaggttcgattccctctggtgc 17149575  T
Q  114 taatttcggttggcaagtccatac-gagccttg 145  Q
    |||||||||||||||||||||||| ||||||||    
T  17149574 taatttcggttggcaagtccatacagagccttg 17149542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 9208296 - 9208363
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac-gagccttg 145  Q
    ||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||||| ||||||||    
T  9208296 cctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggcaagtccatacagagccttg 9208363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 6691583 - 6691531
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| |||||||||    
T  6691583 agtgtgctcctctcaaggtctcaggttcgattctctccggtgccaatttcggt 6691531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 9583409 - 9583461
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||||||||||||  ||||||||||||||| ||| |||||||||    
T  9583409 agtgtgctcctctcaaggtctccagttcgattctctctggtgccaatttcggt 9583461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 11448922 - 11448974
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  11448922 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 11448974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 10377763 - 10377817
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||||| |||| || || ||| ||||||||| |||||||||||||    
T  10377763 tcaaggtctcaggttcaattccctatggtgccaatttcggtgggcaagtccatac 10377817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 28028581 - 28028623
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcg 121  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||    
T  28028581 cctctcaaggtctcatgttcgattctccctgatgccaatttcg 28028623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 15360245 - 15360192
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  15360245 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 15360192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 654292 - 654240
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  654292 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 654240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 3222781 - 3222729
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  3222781 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 3222729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 5360217 - 5360165
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| |||| |||| ||||||||| ||| ||||||||||    
T  5360217 aggtctcaggttcgattccctctaatgccaatttcggtgggctaagtccatac 5360165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 11306194 - 11306158
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  11306194 tcaaggtctcaggttcgattctctctggtgccaattt 11306158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 12390476 - 12390528
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  12390476 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 12390528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 17328284 - 17328248
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  17328284 tcaaggtttcaggttcgattctctctgatgttaattt 17328248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28742002 - 28741970
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattc 103  Q
    ||||||| |||||||||||||||||||||||||    
T  28742002 agtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 19605998 - 19605940
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  19605998 cctctcaaggtctcaggttcgattccctctaatgctaatttcggtgggcaagtccatac 19605940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 28194294 - 28194178
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac-gagc-----cttggaacgggccccccacaagt 164  Q
    ||||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| ||||     ||| ||||||| ||||| |||||    
T  28194294 agtgtgctcctcttaaggtcttaggttcgattctctctggtgccaatttcggtgggcaagtccatacagagcaaaagcttagaacggggcccccgcaagt 28194195  T
Q  165 gggtggtgggattggtc 181  Q
     || |||||||||||||    
T  28194194 aggcggtgggattggtc 28194178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 8192512 - 8192447
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccata 136  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||||    
T  8192512 agtgtgctcctctcaaggtctcaggttcgattccctctggtgccaatgtcggtgggcaagtccata 8192447  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 30943134 - 30943198
Alignment:
Q  73 tgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||| ||||||||||||||| ||| |||||||||| |||| ||||||||| ||| |||||||||    
T  30943134 tgtgctcctctcaaggtctcaagtttgattctctcttatgccaatttcggtgggctagtccatac 30943198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 19525548 - 19525491
Alignment:
Q  80 ctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||| ||||||||||||||| ||||| ||| ||||| ||| |||||||||||||    
T  19525548 ctctcaagatctcaggttcgattccctctggtgccaattttggtgggcaagtccatac 19525491  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 30466976 - 30466924
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  30466976 aggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatac 30466924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 6099551 - 6099517
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctc 105  Q
    ||||||| |||||||||||||||||||||||||||    
T  6099551 agtgtgctcctctcaaggtctcaggttcgattctc 6099517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 26482136 - 26482170
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctc 105  Q
    ||||||| |||||||||||||||||||||||||||    
T  26482136 agtgtgctcctctcaaggtctcaggttcgattctc 26482170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 29996478 - 29996444
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||||| |||||||||||    
T  29996478 aaggtctcaggttcgattctctcggatgctaattt 29996444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 3943790 - 3943843
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||| ||||||||||    
T  3943790 aaggtctcagattcgattttctctggtgccaatttcggttggctaagtccatac 3943843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 13803550 - 13803587
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  13803550 ctcaaggtctcaggttcgattatctctgatgccaattt 13803587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 26176357 - 26176292
Alignment:
Q  72 gtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||| |||||||||||||||| |||||||||| ||| ||| ||||| ||| | | |||||||||    
T  26176357 gtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggcctagtccatac 26176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 33569875 - 33569842
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||| |||||||||    
T  33569875 aggtctcaggttcgattctctctggtgctaattt 33569842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 9318092 - 9318060
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatt 118  Q
    |||||||||||||||||||||||||||| ||||    
T  9318092 aggtctcaggttcgattctctctgatgccaatt 9318060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 9776360 - 9776396
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  9776360 tcaagatctcaggttcgattatctctgatgctaattt 9776396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 10324948 - 10324996
Alignment:
Q  88 gtctcaggttcgattctctctgatgctaatttcggttggcaagtccata 136  Q
    |||||||||||||||| |||| ||| |||||||||| ||||||| ||||    
T  10324948 gtctcaggttcgattccctcttatgttaatttcggtgggcaagttcata 10324996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 10582136 - 10582084
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  10582136 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 10582084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 16525221 - 16525273
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||  |||||||||||||||||||||||||| | | ||| |||||||||    
T  16525221 agtgtgcgactctcaaggtctcaggttcgattctccccggtgccaatttcggt 16525273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 17324817 - 17324869
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  17324817 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 17324869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 36179922 - 36179978
Alignment:
Q  81 tctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||| |||||||| ||||||||||| ||||||  ||||||| | |||||||||||||    
T  36179922 tctcgaggtctcatgttcgattctccctgatgtcaatttcgataggcaagtccatac 36179978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 3951151 - 3951089
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtcc 133  Q
    ||||||| |||||||| ||||| |||||| || |||||||||||||||||||| |||||||||    
T  3951151 agtgtgctcctctcaaagtctcgggttcgcttttctctgatgctaatttcggtgggcaagtcc 3951089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 23330900 - 23330834
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| |||||||||||||||||||||| || ||| | ||| ||||||||| |||||||||||||    
T  23330900 agtgtgctcctctcaaggtctcaggttcgactccctccggtgccaatttcggtgggcaagtccatac 23330834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 28647009 - 28647075
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||  |||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||||    
T  28647009 agtgtgcttctctcaaggtctcaggttcgattccctctggtgccaatttcggtgggcaagtcaatac 28647075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 13106803 - 13106766
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13106803 ctcaaggtctcaggttcgattctctctgatgctaattt 13106766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 17113850 - 17113887
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17113850 ctcaaggtctcaagttcgattctctctgatgctaattt 17113887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 11997904 - 11997956
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||    
T  11997904 aggtctcaggttcgattccctctggtgccaatttcggttggctaagtccatac 11997956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 21217979 - 21217927
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||    
T  21217979 aggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccatac 21217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 22696360 - 22696412
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||    
T  22696360 agtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggt 22696412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 22638346 - 22638384
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  22638346 aaggtctcaggttcgattccctctggtgctaatttcggt 22638384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 654851 - 654798
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  654851 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 654798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 2751325 - 2751378
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  2751325 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 2751378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 21558183 - 21558220
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  21558183 ctcaaggtctcaggttcgattctctctggtgccaattt 21558220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 26459431 - 26459394
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  26459431 ctcaaggtctcaggttcgattctctctggtgccaattt 26459394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 43215239 - 43215276
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  43215239 ctcaaggtctcaggttcgattctctcttatgccaattt 43215276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 1469162 - 1469218
Alignment:
Q  81 tctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||||||||||  || | |||| ||||||| | |||||||||||||    
T  1469162 tctcaaggtctcaggttcgatttcctttaatgccaatttcgatgggcaagtccatac 1469218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 7176008 - 7175956
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  7176008 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 7175956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 7275332 - 7275384
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  7275332 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 7275384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 11910107 - 11910047
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatacga 139  Q
    |||||||||||||||||||| ||| |||||| ||  ||||| ||| | |||||||||||||    
T  11910107 cctctcaaggtctcaggttcaattttctctggtgtcaattttggtggtcaagtccatacga 11910047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 17212108 - 17212160
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| ||||||||||    
T  17212108 aggtctcaggttcaattctctctggtgccaatttcggtgggctaagtccatac 17212160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 22119943 - 22119995
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  22119943 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 22119995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 29861725 - 29861777
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  29861725 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 29861777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 36173085 - 36173141
Alignment:
Q  81 tctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||| ||||||||||||| ||||  ||| ||||| ||| |||||||||||||    
T  36173085 tctcaaggtttcaggttcgattccctcttgtgccaattttggtgggcaagtccatac 36173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 40543056 - 40543004
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  40543056 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 40543004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 41907659 - 41907607
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| |||||| || ||| ||||||||||    
T  41907659 aggtctcaggttcgattctctctggtgccaatttcagtgggctaagtccatac 41907607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 19145564 - 19145506
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||| |||||||||| ||||| ||| ||||||||| |||||||||||||    
T  19145564 cctctcaaggtctccggttcgattccctctggtgccaatttcggtgggcaagtccatac 19145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 16173016 - 16172982
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctc 105  Q
    ||||||| |||||||||||||||||||||||||||    
T  16173016 agtgtgctcctctcaaggtctcaggttcgattctc 16172982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 36895461 - 36895527
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| ||||||||||| ||| ||||||||| ||||| | | ||||||||| | |||||||||||    
T  36895461 agtgtgctcctctcaaggtttcatgttcgattccctctggtaccaatttcggtggtcaagtccatac 36895527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 40330677 - 40330731
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtcc 133  Q
    ||||||||||||||| |||| ||||||| || ||||||||||| | |||||||||    
T  40330677 cctctcaaggtctcaagttcaattctctatggtgctaatttcgttgggcaagtcc 40330731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 8780514 - 8780551
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctct 108  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  8780514 agtgtgctcctctcaaggtctcaggttcgattgtctct 8780551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 14285216 - 14285253
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  14285216 ctcaaggtctcaggttcgattctctctggtgccaattt 14285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 16773866 - 16773899
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| |||||    
T  16773866 aggtctcaggttcgattctctctgatgccaattt 16773899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 15485452 - 15485420
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattc 103  Q
    ||||||| |||||||||||||||||||||||||    
T  15485452 agtgtgctcctctcaaggtctcaggttcgattc 15485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 27498877 - 27498825
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  27498877 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 27498825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 38684259 - 38684311
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  38684259 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 38684311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 25237141 - 25237084
Alignment:
Q  80 ctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||||||||||||| ||||  ||| ||||||||| |||||||||||||    
T  25237141 ctctcaaggtctcaggttcgattccctctagtgccaatttcggtgggcaagtccatac 25237084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 1138615 - 1138681
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| ||||||||||||| |||||||| |||||||  ||| ||||||||| | |||||||||||    
T  1138615 agtgtgctcctctcaaggtcttaggttcgaatctctctagtgccaatttcggtggacaagtccatac 1138681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 32729589 - 32729647
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||| |||||||||||||||| || || ||| ||||||||| |||||||||||||    
T  32729589 cctctcaaagtctcaggttcgattccctatggtgccaatttcggtgggcaagtccatac 32729647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 7766873 - 7766821
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  7766873 aggtctcaggttcgattccctctggtgctaatttcggtgggctaagtccatac 7766821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 8077698 - 8077750
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  8077698 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 8077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 9500501 - 9500449
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  9500501 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 9500449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 15059548 - 15059496
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  15059548 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 15059496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 19034533 - 19034481
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||| |||||||||||| |||||| ||| ||||||||| |||||||||||||    
T  19034533 aaggtttcaggttcgattatctctggtgccaatttcggtgggcaagtccatac 19034481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 23734167 - 23734219
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||    
T  23734167 aggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccatac 23734219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 23741359 - 23741411
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||    
T  23741359 aggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccatac 23741411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 39964548 - 39964600
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||    
T  39964548 agtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggt 39964600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 7197392 - 7197341
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||||||| ||||||||| ||||||||| || ||||| ||||    
T  7197392 aggtctcaggttcgattccctctgatgccaatttcggtgggtaagtcaatac 7197341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 24217014 - 24217080
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| ||||||||||||||||||||||||  || || ||| ||||||||| || || |||||||    
T  24217014 agtgtgctcctctcaaggtctcaggttcgattacctttggtgccaatttcggtgggtaaatccatac 24217080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 1486463 - 1486520
Alignment:
Q  80 ctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||||||||||||| || || ||| ||||||| | || ||||||||||    
T  1486463 ctctcaaggtctcaggttcgattccctttggtgccaatttcgatgggtaagtccatac 1486520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 2799917 - 2799954
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  2799917 ctcaaggtctcaggttcgattctctctggtgccaattt 2799954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 16539657 - 16539710
Alignment:
Q  84 caaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||| ||||| ||||| ||| ||||| ||| |||||||||||||    
T  16539657 caaggtctcaggtttgattccctctggtgccaattttggtgggcaagtccatac 16539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 18646904 - 18646941
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  18646904 aggtctcaggttcgattctctctggtgccaatttcggt 18646941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 27455012 - 27454975
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  27455012 aggtctcaggttcgattcactctgatgccaatttcggt 27454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 29753704 - 29753741
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  29753704 ctcaaggtctcaggttcgattctctctggtgccaattt 29753741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 33700794 - 33700757
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  33700794 ctcaaggtctcaggttcgattctctctggtgccaattt 33700757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 36371525 - 36371562
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  36371525 ctcaaggtctgaggttcgattctctctgatgccaattt 36371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 43927597 - 43927568
Alignment:
Q  89 tctcaggttcgattctctctgatgctaatt 118  Q
    ||||||||||||||||||||||||||||||    
T  43927597 tctcaggttcgattctctctgatgctaatt 43927568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 46607860 - 46607913
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  46607860 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 46607913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 4621383 - 4621331
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  4621383 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 4621331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 6471690 - 6471726
Alignment:
Q  37 gttggtttgggatcttggagtatgctcctctcaaagt 73  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  6471690 gttggtttgagatcttggagtatgcttctctcaaagt 6471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 16899557 - 16899605
Alignment:
Q  89 tctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||| ||||| ||| ||||||||| ||| |||||||||    
T  16899557 tctcaggttcgattccctctggtgccaatttcggtgggccagtccatac 16899605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 24122074 - 24122126
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  24122074 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 24122126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 24674444 - 24674496
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  24674444 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 24674496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 40810523 - 40810559
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  40810523 tcaaggtctcaggttcgattctctctggtgccaattt 40810559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 45859189 - 45859137
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  45859189 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 45859137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 123204 - 123105
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatacgagccttggaacgggccccccacaagtgggtggtgggattg 178  Q
    |||||| || ||||| ||||||||| ||||| ||| ||||||||| |||||||||||||  | ||| |||| ||  ||||||||||| ||||||||||||    
T  123204 cctctctagatctcatgttcgattccctctgttgccaatttcggtgggcaagtccatac--ggcttagaacagg-gccccacaagtgtgtggtgggattg 123108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 13017764 - 13017870
Alignment:
Q  70 aagtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatacgagccttggaacgggccccccacaagtgggtg 169  Q
    |||||||  |||||||||||||||||||| |||| ||||| ||| ||||| ||| ||||||| |||||     || ||||||| ||||| ||||||||      
T  13017764 aagtgtgttcctctcaaggtctcaggttccattccctctgttgccaattttggtgggcaagttcatac-----ttagaacgggacccccgcaagtgggca 13017858  T
Q  170 gtgggattggtc 181  Q
    ||||||||||||    
T  13017859 gtgggattggtc 13017870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 24273257 - 24273324
Alignment:
Q  70 aagtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||| ||||| ||| |||||||||||||| |||||| |||||| |||||| ||||| |||||||    
T  24273257 aagtgtgctcctctgaagatctcaggttcgattttctctggtgctaagttcggtgggcaaatccatac 24273324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 10048034 - 10048072
Alignment:
Q  81 tctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10048034 tctcatggtctcaggttcgattctctctgatgctaattt 10048072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 29195138 - 29195194
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggc 127  Q
    ||||||| |||||||||||| || |||||||||||||| |||| ||||| |||||||    
T  29195138 agtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattttggttggc 29195194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 34844904 - 34844852
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  34844904 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 34844852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 40058998 - 40058946
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  40058998 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 40058946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 49287909 - 49287961
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  49287909 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 49287961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 3392825 - 3392774
Alignment:
Q  72 gtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||| ||||||||||||||||||||||||  ||||| || ||||||||||    
T  3392825 gtgtgctcctctcaaggtctcaggttcgatttcctctggtgttaatttcggt 3392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 5609347 - 5609296
Alignment:
Q  87 ggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  5609347 ggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 5609296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 22630332 - 22630281
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||| ||| |||||||||||||    
T  22630332 aggtctcaggttcgattccctctggtgccaattttggtgggcaagtccatac 22630281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 37980180 - 37980146
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctc 105  Q
    ||||||| |||||||||||||||||||||||||||    
T  37980180 agtgtgctcctctcaaggtctcaggttcgattctc 37980146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 39288883 - 39288917
Alignment:
Q  36 ggttggtttgggatcttggagtatgctcctctcaa 70  Q
    |||||||||||||||||||||| ||||||||||||    
T  39288883 ggttggtttgggatcttggagtttgctcctctcaa 39288917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 56409994 - 56410028
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctc 105  Q
    ||||||| |||||||||||||||||||||||||||    
T  56409994 agtgtgctcctctcaaggtctcaggttcgattctc 56410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 19660678 - 19660641
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  19660678 aggtctcaggtttgattctctctgatgcaaatttcggt 19660641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 25852264 - 25852317
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  25852264 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 25852317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 32942428 - 32942473
Alignment:
Q  93 aggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  32942428 aggttcgattctctctgatgccaatttcggtgggctaagtccatac 32942473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 37109372 - 37109335
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  37109372 ctcaaggtctcaggttcgattctctctggtgccaattt 37109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 37274480 - 37274443
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  37274480 ctcaaggtcttaggttcgattctctctggtgctaattt 37274443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 9517787 - 9517735
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||||| ||| |||||| || ||| ||||||||||    
T  9517787 aggtctcaggttcgattctctctggtgccaatttcagtgggctaagtccatac 9517735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 12710195 - 12710227
Alignment:
Q  35 tggttggtttgggatcttggagtatgctcctct 67  Q
    |||||||||||||||||||||||||||| ||||    
T  12710195 tggttggtttgggatcttggagtatgcttctct 12710227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 27528941 - 27528889
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  27528941 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 27528889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 33992677 - 33992729
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||| ||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  33992677 aggtcttaggttcgattctctctggtgccaatttcggtgggctaagtccatac 33992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 43719211 - 43719159
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||| ||||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  43719211 aggtttcaggttcgattctctctagtgctaatttcggtgggctaagtccatac 43719159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 240936 - 240903
Alignment:
Q  37 gttggtttgggatcttggagtatgctcctctcaa 70  Q
    ||||||||||||||||||||||||||||||||||    
T  240936 gttggtttgggatcttggagtatgctcctctcaa 240903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 33585788 - 33585723
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccata 136  Q
    ||||||| |||||||| || ||||||||||||  |||| ||| |||||||||| ||||||||||||    
T  33585788 agtgtgctcctctcaaagtttcaggttcgatttcctcttatgttaatttcggtaggcaagtccata 33585723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 6953159 - 6953101
Alignment:
Q  80 ctctcaaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||| ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  6953159 ctctaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 6953101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 18128552 - 18128618
Alignment:
Q  70 aagtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccata 136  Q
    |||||||| ||| ||||||||| || |||||||||||||| ||| ||||||||| ||| | ||||||    
T  18128552 aagtgtgctcctttcaaggtcttagattcgattctctctggtgccaatttcggtgggcgaatccata 18128618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 26169001 - 26168943
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||||||| |||||   ||||||| ||||||||| ||||||| |||||    
T  26169001 cctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggcaagttcatac 26168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 33017256 - 33017306
Alignment:
Q  70 aagtgtgcccctc-tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||| |||||    
T  33017256 aagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaattt 33017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 34639367 - 34639302
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| ||||||||||||||||| |||| || ||||| ||| ||||||||| || ||||||||||    
T  34639367 agtgtgctcctctcaaggtctcaggctcga-tccctctggtgccaatttcggtgggtaagtccatac 34639302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 36094732 - 36094790
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||||||||||||| ||||| |   ||||||||| | |||||||||||    
T  36094732 cctctcaaggtctcaggttcgattccctctggtatcaatttcggtagacaagtccatac 36094790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 1372562 - 1372521
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatg 112  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||    
T  1372562 agtgtgctcctcttaaggtctcaggttcgattccctctgatg 1372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 3734770 - 3734717
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  3734770 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 3734717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 18540353 - 18540390
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  18540353 ctcaaggtctcaggttcgattctctctggtgccaattt 18540390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 3403653 - 3403597
Alignment:
Q  81 tctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||| | |||||||||  |||| ||| ||||||||| |||||||||||||    
T  3403653 tctcaaggtcttatgttcgattccatctggtgccaatttcggtgggcaagtccatac 3403597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 4718700 - 4718752
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  4718700 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 4718752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 15259552 - 15259500
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  15259552 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 15259500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 31843845 - 31843881
Alignment:
Q  83 tcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  31843845 tcaaagtctcaggttcgattttctctgatgctaattt 31843881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 34237801 - 34237749
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  34237801 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 34237749  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 39349311 - 39349363
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  39349311 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 39349363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 8796114 - 8796077
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||| |||||||||||||||||||||||||    
T  8796114 ctcaaggtctcaagttcgattctctctgatgctaattt 8796077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 40777056 - 40777108
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||| |||||||||    
T  40777056 agtgtgctcctctcaaggtctcaggtttgattctctctagtgccaatttcggt 40777108  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 30695411 - 30695344
Alignment:
Q  70 aagtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||  |||||||||||||| |||||| | ||||||||| ||||||| || |||||||| ||||    
T  30695411 aagtgtgcttctctcaaggtctcacgttcgactatctctgatgttaatttcagtgggcaagtctatac 30695344  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 39253740 - 39253783
Alignment:
Q  71 agtgtgcccctct-caaggtctcaggttcgattctctctgatgc 113  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  39253740 agtgtgctcctcttcaaggtctcaggttcgattctctctgatgc 39253783  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 1178228 - 1178274
Alignment:
Q  91 tcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||||||||||| ||| ||| ||||||||| |||||||||||||    
T  1178228 tcaggttcgattctccctggtgccaatttcggtgggcaagtccatac 1178274  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 7485672 - 7485634
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  7485672 aaggtctcaggttcgattccctctgatgccaatttcggt 7485634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 26158854 - 26158920
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    ||||||| |||||||||||||||||||  |||| || || ||| ||||||||| || ||||||||||    
T  26158854 agtgtgctcctctcaaggtctcaggtttcattccctttggtgccaatttcggtgggtaagtccatac 26158920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 53234054 - 53234004
Alignment:
Q  88 gtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  53234054 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatac 53234004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 53863900 - 53863850
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcg 121  Q
    ||||||| ||||||||||||| |||||| |||||||||| ||| |||||||    
T  53863900 agtgtgctcctctcaaggtcttaggttcaattctctctggtgccaatttcg 53863850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 10445156 - 10445123
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||| |||||||||    
T  10445156 aggtctcaggttcgattctctctggtgctaattt 10445123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 24407312 - 24407349
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  24407312 aggtctcagattcgattctctctggtgctaatttcggt 24407349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 28703437 - 28703388
Alignment:
Q  71 agtgtgcccctct-caaggtctcaggttcgattctctctgatgctaattt 119  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||| |||||    
T  28703437 agtgtgctcctcttcaaggtctcaggttcgattctctctggtgccaattt 28703388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 51532839 - 51532892
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||| |||||||||||||| |||| ||||||||| ||| ||||||||||    
T  51532839 aaggtctcatgttcgattctctctaatgccaatttcggtgggctaagtccatac 51532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 8456296 - 8456244
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  8456296 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 8456244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 11092202 - 11092150
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||  ||||||||||||||  |||||||||| ||| |||||||||||||    
T  11092202 agtgtgctactctcaaggtctcaacttcgattctccctggtgctaatttcggt 11092150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 15034396 - 15034440
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    |||||||||||||||||||| |||||| ||| ||| |||||||||    
T  15034396 cctctcaaggtctcaggttcaattctccctggtgccaatttcggt 15034440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 26108343 - 26108395
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  26108343 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 26108395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 30807299 - 30807247
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  30807299 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 30807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 31766727 - 31766779
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||||| ||||| ||||||||||||||||||  ||||||||  |||||||||    
T  31766727 agtgtgctcctcttaaggtctcaggttcgatttcctctgatgtcaatttcggt 31766779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 34844414 - 34844446
Alignment:
Q  71 agtgtgcccctctcaaggtctcaggttcgattc 103  Q
    ||||||| |||||||||||||||||||||||||    
T  34844414 agtgtgctcctctcaaggtctcaggttcgattc 34844446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 35492962 - 35493014
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  35492962 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 35493014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 40268540 - 40268584
Alignment:
Q  79 cctctcaaggtctcaggttcgattctctctgatgctaatttcggt 123  Q
    ||||| ||||||||||||||||||||| | ||||| |||||||||    
T  40268540 cctcttaaggtctcaggttcgattctccccgatgccaatttcggt 40268584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 50583008 - 50583040
Alignment:
Q  35 tggttggtttgggatcttggagtatgctcctct 67  Q
    ||||||||||||||||||||||| |||||||||    
T  50583008 tggttggtttgggatcttggagtttgctcctct 50583040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 29304 - 29237
Alignment:
Q  70 aagtgtgcccctctcaaggtctcaggttcgattctctctgatgctaatttcggttggcaagtccatac 137  Q
    |||||||  ||||||||||||| ||||||||||| | ||||||| | ||||||| || ||||||||||    
T  29304 aagtgtgttcctctcaaggtcttaggttcgattcccgctgatgccattttcggtcggtaagtccatac 29237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 5229 - 5176
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  5229 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 5176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 2732 - 2695
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  2732 ctcaaggtctcaggttcgattctctctggtgccaattt 2695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 8553 - 8508
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggcaagt 131  Q
    ||||||||||||||||| |||||| ||| ||||||||| |||||||    
T  8553 aggtctcaggttcgattatctctggtgccaatttcggtgggcaagt 8508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 19983 - 19946
Alignment:
Q  82 ctcaaggtctcaggttcgattctctctgatgctaattt 119  Q
    |||||||||||||||||||||||||||| || ||||||    
T  19983 ctcaaggtctcaggttcgattctctctggtgttaattt 19946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 97513 - 97460
Alignment:
Q  85 aaggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  97513 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 97460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 40376 - 40428
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  40376 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 40428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 161860 - 161912
Alignment:
Q  86 aggtctcaggttcgattctctctgatgctaatttcggttggc-aagtccatac 137  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  161860 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatac 161912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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