View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16022_low_6 (Length: 548)

Name: NF16022_low_6
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16022_low_6
NF16022_low_6
[»] scaffold0007 (30 HSPs)
scaffold0007 (20-519)||(70339-70838)
scaffold0007 (206-519)||(34693-35006)
scaffold0007 (206-519)||(40006-40319)
scaffold0007 (61-282)||(34482-34703)
scaffold0007 (61-282)||(39795-40016)
scaffold0007 (20-173)||(38767-38920)
scaffold0007 (20-173)||(39049-39202)
scaffold0007 (20-173)||(38908-39061)
scaffold0007 (20-173)||(33736-33889)
scaffold0007 (20-173)||(33877-34030)
scaffold0007 (20-173)||(38485-38638)
scaffold0007 (20-173)||(38626-38779)
scaffold0007 (20-173)||(34018-34171)
scaffold0007 (20-173)||(39190-39343)
scaffold0007 (20-173)||(70198-70351)
scaffold0007 (20-143)||(25396-25519)
scaffold0007 (78-173)||(69833-69928)
scaffold0007 (61-173)||(34200-34312)
scaffold0007 (61-173)||(39372-39484)
scaffold0007 (61-173)||(39513-39625)
scaffold0007 (20-173)||(34300-34453)
scaffold0007 (20-173)||(39613-39766)
scaffold0007 (78-170)||(25172-25264)
scaffold0007 (78-170)||(33512-33604)
scaffold0007 (78-170)||(38261-38353)
scaffold0007 (126-173)||(25361-25408)
scaffold0007 (126-173)||(33701-33748)
scaffold0007 (126-173)||(38450-38497)
scaffold0007 (68-173)||(69964-70069)
scaffold0007 (20-173)||(70057-70210)
[»] chr6 (13 HSPs)
chr6 (55-524)||(28905779-28906249)
chr6 (68-173)||(28905087-28905192)
chr6 (68-173)||(28905228-28905333)
chr6 (50-173)||(28904787-28904910)
chr6 (68-173)||(28905369-28905474)
chr6 (56-173)||(28905639-28905756)
chr6 (68-173)||(28904946-28905051)
chr6 (70-173)||(28905512-28905615)
chr6 (206-282)||(28488755-28488831)
chr6 (206-282)||(29801167-29801243)
chr6 (205-281)||(29470899-29470975)
chr6 (206-282)||(29719885-29719961)
chr6 (206-282)||(29720731-29720807)
[»] scaffold0573 (3 HSPs)
scaffold0573 (50-173)||(4890-5013)
scaffold0573 (68-173)||(4749-4854)
scaffold0573 (68-114)||(4667-4713)
[»] chr1 (2 HSPs)
chr1 (207-280)||(5919995-5920068)
chr1 (243-281)||(5920135-5920173)


Alignment Details
Target: scaffold0007 (Bit Score: 368; Significance: 0; HSPs: 30)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 70339 - 70838
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  70339 ggataagcttaaaattttgaaggttgttgattgtagaaagctccaaactattccatctctcaaattaccttcattggaggaactcactcttagtggttta 70438  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaagtcttgaaaattagatattgctatgagctgtggagttttccacctg 219  Q
      ||| ||| |||||||||||  | ||||||| ||||||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||| ||    
T  70439 gatagcattgagagtctttctttcttgttggatgagtcattggataaacttaaagtcttgagtattagacattgctataagctgtggagttttccacatg 70538  T
Q  220 tcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccacgtatcaccagtcggtcaatgactaaacttaaaatatt 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  70539 tcatgttgccttcactagaaatccttgatctttcatattgtgattctctcgagagttttccacgtatcatcagtcggtcaatgactaaacttaaaatatt 70638  T
Q  320 gagacttaatggttgtaaaaagctcaggaatattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttacc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||  ||||||| |||| || ||||||||    
T  70639 gagacttaatggttgtaaaaagctcaggaatattcatgctatcaatgtggcttccttagatgagttctatcattcaggatgtgagagtgtcaagtttacc 70738  T
Q  420 acctctgactgatggaagagattaatgcagtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat 519  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  70739 acctctgactgatggaagagattaatgcagtttataccatttcattctgtcaactcaagagcactcccattactaggtagctctttaaaaagataattat 70838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 206 - 519
Target Start/End: Original strand, 34693 - 35006
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccacgtatcaccagtcggtcaatgact 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  34693 gagttttccacctgtcatgttgccttcactagaaatccttgatctttcatattgtaaatctctcgagagttttccacgtatcaccagtcggtcaatgact 34792  T
Q  306 aaacttaaaatattgagacttaatggttgtaaaaagctcaggaatattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtggga 405  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||    
T  34793 aaacttaaaatattgagacttgaaggttgtgaaaagctcaggaatattcatgctatcaatgtggattccttagatgaattcgattattcaggatgtgaga 34892  T
Q  406 gtctcgagtttaccacctctgactgatggaagagattaatgcagtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctcttt 505  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34893 gtctcgagtttcccacctctgactgatggaagagattaatgcagtttacaccatttcattgtgtcaactcaagagcactcccattactaggtagctcttt 34992  T
Q  506 aaaaagataattat 519  Q
    ||||||||| ||||    
T  34993 aaaaagatatttat 35006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 206 - 519
Target Start/End: Original strand, 40006 - 40319
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccacgtatcaccagtcggtcaatgact 305  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  40006 gagttttccacctgtcatgttgccttcactagaaatccttgatctttcatattgtaaatctctcgagagttttccacgtatcaccagtcggtcaatgact 40105  T
Q  306 aaacttaaaatattgagacttaatggttgtaaaaagctcaggaatattcatgctatcaatgtggcttccttagatgaattcgattattggggatgtggga 405  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||    
T  40106 aaacttaaaatattgagacttgaaggttgtgaaaagctcaggaatattcatgctatcaatgtggattccttagatgaattcgattattcaggatgtgaga 40205  T
Q  406 gtctcgagtttaccacctctgactgatggaagagattaatgcagtttacaccatttcattctgtcaactcaagagcactcccattactaggtagctcttt 505  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40206 gtctcgagtttcccacctctgactgatggaagagattaatgcagtttacaccatttcattgtgtcaactcaagagcactcccattactaggtagctcttt 40305  T
Q  506 aaaaagataattat 519  Q
    ||||||||| ||||    
T  40306 aaaaagatatttat 40319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 61 - 282
Target Start/End: Original strand, 34482 - 34703
Alignment:
Q  61 tccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcatt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||    
T  34482 tccaaactattccatctctcaaattaccttcattggagaaactcactcttaaaggtttatatggtattaagagtctttctcccatgttggatgagtcatt 34581  T
Q  161 ggataaacttaaagtcttgaaaattagatattgctatgagctgtggagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgt 260  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| |||||| |||||||    
T  34582 ggataaacttaaagtcttgaatattagatattgctatgacctgtgtagttttccacatgtcatgttgccttcactagaaatccttaatcttttatattgt 34681  T
Q  261 gattctctcgagagttttccac 282  Q
     ||| |||||||||||||||||    
T  34682 tattttctcgagagttttccac 34703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 61 - 282
Target Start/End: Original strand, 39795 - 40016
Alignment:
Q  61 tccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcatt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||    
T  39795 tccaaactattccatctctcaaattaccttcattggagaaactcactcttaaaggtttatatggtattaagagtctttctcccatgttggatgagtcatt 39894  T
Q  161 ggataaacttaaagtcttgaaaattagatattgctatgagctgtggagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgt 260  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| |||||| |||||||    
T  39895 ggataaacttaaagtcttgaatattagatattgctatgacctgtgtagttttccacatgtcatgttgccttcactagaaatccttaatcttttatattgt 39994  T
Q  261 gattctctcgagagttttccac 282  Q
     ||| |||||||||||||||||    
T  39995 tattttctcgagagttttccac 40016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 38767 - 38920
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  38767 ggataagcttaaaattttgaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 38866  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||| ||||||    
T  38867 tctagtattgagagtctttctcccacgttggatgagtcgttggataagcttaaa 38920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 39049 - 39202
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  39049 ggataagcttaaaattttgaaggttgttgaatgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttcgctattta 39148  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  39149 tctagtattgagagtctttctcccatgttggatgagtcattggataagcttaaa 39202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 38908 - 39061
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  38908 ggataagcttaaaattttgaaggttgttgaatgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 39007  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||| ||||||    
T  39008 tctagtattgagagtctttctcccacgttggatgagtcgttggataagcttaaa 39061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 33736 - 33889
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  33736 ggataagcttaaaattttgatggttgaatattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 33835  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||    
T  33836 tctagtattgagagtctttctcccacgttggatgagtcattggataagcttaaa 33889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 33877 - 34030
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  |||  |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  33877 ggataagcttaaaattttggaggttgatgattgtggaaagctccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 33976  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  33977 tctagtattgagagtctttctcccatgttggatgagtcgttggataagcttaaa 34030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 38485 - 38638
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  38485 ggataagcttaaaattttgatggttgaatattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 38584  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||    
T  38585 tctagtattgagagtctttctcccacgttggatgagtcattggataagcttaaa 38638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 38626 - 38779
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  |||  |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  38626 ggataagcttaaaattttggaggttgatgattgtggaaagctccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 38725  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  38726 tctagtattgagagtctttctcccatgttggatgagtcgttggataagcttaaa 38779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 34018 - 34171
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||  |  ||||    
T  34018 ggataagcttaaaattttgaaggttgttgattgtgcaaagctccaaactattccatctctcaaattaccttcattggagaaactcaggcttggaagttta 34117  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  34118 tctagtattcagagtctttctcccatgttggatgagtcgttggataagcttaaa 34171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 39190 - 39343
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||  |  ||||    
T  39190 ggataagcttaaaattttgaaggttgttgattgtgcaaagctccaaactattccatctctcaaattaccttcattggagaaactcaggcttggaagttta 39289  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  39290 tctagtattcagagtctttctcccatgttggatgagtcgttggataagcttaaa 39343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #15
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 70198 - 70351
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  |||  ||||| |||| |||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||    
T  70198 ggataagcttaaaattttggaggtttttgaatgtggaaatctccaaactattccatctcgcaaattaccttcattggaggaactcactcttaactgttta 70297  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  70298 tctagtactaagagtctttctcccatgttggatgagtcattggataagcttaaa 70351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 25396 - 25519
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  25396 ggataagcttaaaattttgatggttgaatattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttagcaattta 25495  T
Q  120 tctagtattaagagtctttctccc 143  Q
    ||||||||| ||||||||||||||    
T  25496 tctagtattgagagtctttctccc 25519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #17
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 69833 - 69928
Alignment:
Q  78 ctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  69833 ctcaaattaccttcattggaggaactcactcttaaaggtttatctggtattaagagtctttcttccatgttgaatgagtcattggataaacttaaa 69928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 34200 - 34312
Alignment:
Q  61 tccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcatt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||  |  ||||||||||||| |||||||||||||||||||||| ||||| ||    
T  34200 tccaaactattccatctctcaaattaccttcattggagaaactcaggcttggaagtttatctagtattcagagtctttctcccatgttggatgagtcgtt 34299  T
Q  161 ggataaacttaaa 173  Q
    |||||| ||||||    
T  34300 ggataagcttaaa 34312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #19
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 39372 - 39484
Alignment:
Q  61 tccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcatt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||  |  ||||||||||||| |||||||||||||||||||||| ||||| ||    
T  39372 tccaaactattccatctctcaaattaccttcattggagaaactcaggcttggaagtttatctagtattcagagtctttctcccatgttggatgagtcgtt 39471  T
Q  161 ggataaacttaaa 173  Q
    |||||| ||||||    
T  39472 ggataagcttaaa 39484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #20
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 39513 - 39625
Alignment:
Q  61 tccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcatt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||  |  ||||||||||||| |||||||||||||||||||||| ||||| ||    
T  39513 tccaaactattccatctctcaaattaccttcattggagaaactcaggcttggaagtttatctagtattcagagtctttctcccatgttggatgagtcgtt 39612  T
Q  161 ggataaacttaaa 173  Q
    |||||| ||||||    
T  39613 ggataagcttaaa 39625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 34300 - 34453
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| | ||||| || |||||  ||  ||||| ||||||||||||||||||||||||| |||||| |||||   |||  |  ||||    
T  34300 ggataagcttaaaattttgatggttgatggttgtgagaacctccaagctattccatctctcaaattaccttcgttggagcaactctggcttgtaatttta 34399  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    | ||||||| ||||||||||||||||||| || ||||| |||||||| ||||||    
T  34400 tttagtattcagagtctttctcccatgttagatgagtcgttggataagcttaaa 34453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 39613 - 39766
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| | ||||| || |||||  ||  ||||| ||||||||||||||||||||||||| |||||| |||||   |||  |  ||||    
T  39613 ggataagcttaaaattttgatggttgatggttgtgagaacctccaagctattccatctctcaaattaccttcgttggagcaactctggcttgtaatttta 39712  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    | ||||||| ||||||||||||||||||| || ||||| |||||||| ||||||    
T  39713 tttagtattcagagtctttctcccatgttagatgagtcgttggataagcttaaa 39766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 25172 - 25264
Alignment:
Q  78 ctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaactt 170  Q
    ||||||||| |||||||| |  |||||||||||  | |||||| ||||||||||||| |||||||||||||| | ||| ||||||||||||||    
T  25172 ctcaaattagcttcattgaaaaaactcactctttcaaatttatatagtattaagagtttttctcccatgttgaatgaggcattggataaactt 25264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 33512 - 33604
Alignment:
Q  78 ctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaactt 170  Q
    ||||||||| |||||||| |  |||||||||||  | |||||| ||||||||||||| |||||||||||||| | ||| ||||||||||||||    
T  33512 ctcaaattagcttcattgaaaaaactcactctttcaaatttatatagtattaagagtttttctcccatgttgaatgaggcattggataaactt 33604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 38261 - 38353
Alignment:
Q  78 ctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaactt 170  Q
    ||||||||| |||||||| |  |||||||||||  | |||||| ||||||||||||| |||||||||||||| | ||| ||||||||||||||    
T  38261 ctcaaattagcttcattgaaaaaactcactctttcaaatttatatagtattaagagtttttctcccatgttgaatgaggcattggataaactt 38353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 25361 - 25408
Alignment:
Q  126 attaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25361 attaagagtctttctcccatgttggacgagtcattggataagcttaaa 25408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #27
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 33701 - 33748
Alignment:
Q  126 attaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33701 attaagagtctttctcccatgttggacgagtcattggataagcttaaa 33748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #28
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 38450 - 38497
Alignment:
Q  126 attaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38450 attaagagtctttctcccatgttggacgagtcattggataagcttaaa 38497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 69964 - 70069
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| |||| |||||| ||||||||||   ||||||||||  || ||||| ||| |||||||||||||||| ||| || || ||||||||||||||     
T  69964 tattccacctcttaaattaacttcattggaaacactcactctttcagctttatttagaattaagagtctttctcgcattttcgatgagtcattggataag 70063  T
Q  168 cttaaa 173  Q
    ||||||    
T  70064 cttaaa 70069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 70057 - 70210
Alignment:
Q  20 ggataagcttaaatctttaaaggttgttgattgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagattta 119  Q
    |||||||||||||  ||| ||||| |  | ||||| | ||||| | ||||||| |  ||||||| ||  ||||||||||||||||  ||||  | || ||    
T  70057 ggataagcttaaaattttgaaggtcgacggttgtggagagatcaatactattctaaatctcaaaatagtttcattggaggaactctatctttcaaatata 70156  T
Q  120 tctagtattaagagtctttctcccatgttggacgagtcattggataaacttaaa 173  Q
    | ||  |||||||||||||||||||||||||| | |||||||||||| ||||||    
T  70157 tatatcattaagagtctttctcccatgttggatgggtcattggataagcttaaa 70210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 55 - 524
Target Start/End: Original strand, 28905779 - 28906249
Alignment:
Q  55 caaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacga 154  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||  ||||  ||| |||  ||| ||||||||||||||||||||| |||| ||    
T  28905779 caaagatcgaaactattccatctctcaaattagcttcattggaggaactctgtctttcagaattacatagcattaagagtctttctcccatgctggatga 28905878  T
Q  155 gtcattggataaacttaaagtcttgaaaattagatattgctatgagctgtggagttttccacctgtcatgttgccttcactagaaatgcttgatctttca 254  Q
    |||||||||||| || ||||||||||| |||  |  |||||||||||||||||||||||||| |||||||||||||||| | |||   || |||||||||    
T  28905879 gtcattggataagctgaaagtcttgaatattcaaggttgctatgagctgtggagttttccacgtgtcatgttgccttcattggaagaactcgatctttca 28905978  T
Q  255 tattgtgattctctcgagagttttccacgtatcaccagtcggtcaatgactaaacttaaaatattgagacttaatggttgtaaaaagctcaggaatattc 354  Q
    |||||||| | ||| |||| |||||||| |||    ||| |||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  28905979 tattgtgaatatctggagacttttccacctatggtgagtgggtcaatggctaaacttaaaatattgagacttaaagattgtaaaaagctcaggaaaattc 28906078  T
Q  355 atgctatcaatgtggcttccttagatgaattcgattattggggatgtgggagtctcgagtttaccacctctgactgatggaagagattaatgcagtttac 454  Q
      |||||||| |||| |||| |||||||||||||| |||  ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  28906079 cagctatcaacgtggattccctagatgaattcgatcattcaggatgtgagagtctcgagttttccacctctgactgatggaagatattaatgcagtttac 28906178  T
Q  455 accatttcattctgtcaactcaagagcactcccattactaggt-agctctttaaaaagataattatgaacc 524  Q
     ||  |||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||    
T  28906179 tccgcttcattctgtcaactcaagaccactcccattactaggtaagctctttgaaaaggtaattatgaacc 28906249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 28905087 - 28905192
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| |||||  | |||| |||||||||||||||||||| | |||||||||||||||    
T  28905087 tattccacctctcaaattaccttcattggaggaactcaatcttaaagctttattcaatattgagagtctttctcccatgttgaatgagtcattggataaa 28905186  T
Q  168 cttaaa 173  Q
    ||||||    
T  28905187 cttaaa 28905192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 28905228 - 28905333
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||| ||||||  ||||| |||||||||||||||||||| | ||| |||||||||||    
T  28905228 tattccacctctcaaattaccttcattggaggaactcaatcttcaaggtttatcccgtattgagagtctttctcccatgttgaatgagacattggataaa 28905327  T
Q  168 cttaaa 173  Q
    ||||||    
T  28905328 cttaaa 28905333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 28904787 - 28904910
Alignment:
Q  50 ttgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttg 149  Q
    |||| |||||||| ||||||||||| ||||||| |||  ||||||||||||||||  ||||  ||| |||  ||| |||| |||||||||||||||||||    
T  28904787 ttgtccaaagatcgaaactattccacctctcaagttagtttcattggaggaactctatctttcagaattacatagcattatgagtctttctcccatgttg 28904886  T
Q  150 gacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||    
T  28904887 gacgagtcattggataaacttaaa 28904910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 28905369 - 28905474
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| |||||||||||||||||||||||||||||  ||||| ||| ||||  || |||||||| ||| ||||||||||||| |||||||||||||||    
T  28905369 tattccacctctcaaattaccttcattggaggaactctatcttatagaattatggagcattaagagccttcctcccatgttggatgagtcattggataaa 28905468  T
Q  168 cttaaa 173  Q
    ||||||    
T  28905469 cttaaa 28905474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 28905639 - 28905756
Alignment:
Q  56 aaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgag 155  Q
    ||||||| ||||||||||| |||||||||    |||||| |||||||||  ||||  |||||||  ||| |||||||||||||||||||||||||| |||    
T  28905639 aaagatcgaaactattccacctctcaaatatgattcattagaggaactctatctttcagatttagatagcattaagagtctttctcccatgttggatgag 28905738  T
Q  156 tcattggataaacttaaa 173  Q
    ||||||||||||||||||    
T  28905739 tcattggataaacttaaa 28905756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 28904946 - 28905051
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| ||||||||||||||||||||||||||||   ||||  |   ||||   | |||||||||||||||||||||||||| ||||||||| |||||    
T  28904946 tattccacctctcaaattaccttcattggaggaactatatctttcaatattatggggcattaagagtctttctcccatgttggatgagtcattgaataaa 28905045  T
Q  168 cttaaa 173  Q
    ||||||    
T  28905046 cttaaa 28905051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 28905512 - 28905615
Alignment:
Q  70 ttccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaact 169  Q
    ||||| ||||||||||| ||||||||||||||||   ||||  ||  |||  ||| |||||||||||||||||||||||||| ||| ||||| |||||||    
T  28905512 ttccacctctcaaattagcttcattggaggaactatatctttcaggattaaatagcattaagagtctttctcccatgttggatgagacattgaataaact 28905611  T
Q  170 taaa 173  Q
    ||||    
T  28905612 taaa 28905615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 28488831 - 28488755
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccac 282  Q
    |||| |||||||| ||||||||  |||||||||||  ||||| |||||| ||||| ||  |||||||||||||||||    
T  28488831 gagtattccacctctcatgttggattcactagaaacacttgacctttcaaattgttataatctcgagagttttccac 28488755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 29801243 - 29801167
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccac 282  Q
    |||| |||||||| ||||||||  |||||||||||  ||||| |||||| ||||| ||  |||||||||||||||||    
T  29801243 gagtattccacctctcatgttggattcactagaaacacttgacctttcaaattgttataatctcgagagttttccac 29801167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 29470899 - 29470975
Alignment:
Q  205 ggagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttcca 281  Q
    ||||| |||||||| ||| ||||  |||| |||||| |||||| |||||| ||||| ||  ||||||||||||||||    
T  29470899 ggagtattccacctctcaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttcca 29470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 29719961 - 29719885
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccac 282  Q
    |||| |||||||| ||| ||||  |||||||||||  || || ||||||| ||||||| |||| |||||||||||||    
T  29719961 gagtattccacctctcaagttggattcactagaaacactagaactttcatgttgtgatactcttgagagttttccac 29719885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 29720807 - 29720731
Alignment:
Q  206 gagttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttccac 282  Q
    |||| |||||||| ||| ||||  |||||||||||  || || ||||||| ||||||| |||| |||||||||||||    
T  29720807 gagtattccacctctcaagttggattcactagaaacactagaactttcatgttgtgatactcttgagagttttccac 29720731  T

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Target: scaffold0573 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 5013 - 4890
Alignment:
Q  50 ttgtgcaaagatccaaactattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttg 149  Q
    |||| |||||||| ||||||||||| ||||||| |||  ||||||||||||||||  ||||  ||| |||  ||| |||| |||||||||||||||||||    
T  5013 ttgtccaaagatcgaaactattccacctctcaagttagtttcattggaggaactctatctttcagaattacatagcattatgagtctttctcccatgttg 4914  T
Q  150 gacgagtcattggataaacttaaa 173  Q
    ||||||||||||||||||||||||    
T  4913 gacgagtcattggataaacttaaa 4890  T

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Target: scaffold0573; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 4854 - 4749
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaagatttatctagtattaagagtctttctcccatgttggacgagtcattggataaa 167  Q
    ||||||| ||||||||||||||||||||||||||||   ||||  |   ||||   | |||||||||||||||||||||||||| ||||||||| |||||    
T  4854 tattccacctctcaaattaccttcattggaggaactatatctttcaatattatggggcattaagagtctttctcccatgttggatgagtcattgaataaa 4755  T
Q  168 cttaaa 173  Q
    ||||||    
T  4754 cttaaa 4749  T

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Target: scaffold0573; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 4713 - 4667
Alignment:
Q  68 tattccatctctcaaattaccttcattggaggaactcactcttaaag 114  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  4713 tattccacctctcaaattaccttcattggaggaactcaatcttaaag 4667  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 5920068 - 5919995
Alignment:
Q  207 agttttccacctgtcatgttgccttcactagaaatgcttgatctttcatattgtgattctctcgagagttttcc 280  Q
    |||||||||||| ||| |||| ||||  ||||| | |||||||||||||||||||||  |||||||||||||||    
T  5920068 agttttccacctctcaagttggcttctttagaagtacttgatctttcatattgtgataatctcgagagttttcc 5919995  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 5920173 - 5920135
Alignment:
Q  243 cttgatctttcatattgtgattctctcgagagttttcca 281  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  5920173 cttgatctttcatattgtgatagtctcgagagttttcca 5920135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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