View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16022_low_7 (Length: 502)
Name: NF16022_low_7
Description: NF16022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16022_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 28506648 - 28506180
Alignment:
| Q |
7 |
gagtgagatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506648 |
gagtgacatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
28506549 |
T |
|
| Q |
107 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506548 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
28506449 |
T |
|
| Q |
207 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506448 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaa |
28506349 |
T |
|
| Q |
307 |
gcttatggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttcaatccctatctcattcatttggatca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506348 |
gcttatggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttcaatccctatctcattcatttggatca |
28506249 |
T |
|
| Q |
407 |
atatgaaaagaatccttttgttttcaggtcaagacttagaaatttcatcaatggcacaaagttttatac |
475 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506248 |
acatgaaaagaatccttttgttttcaggtcaagacttagaaatttcatcaatggcacaaagttttatac |
28506180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 112 - 380
Target Start/End: Original strand, 51874289 - 51874557
Alignment:
| Q |
112 |
ataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagatggaac |
211 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||| | |||||||||||||||||||| || ||| |||||||||| ||||| || |||| |||| |
|
|
| T |
51874289 |
ataggtaaaatatcaggtccaacagctataactggtttactcttatattcaagagctatgatctctatgcttttccttggctatctcggcgagacagaac |
51874388 |
T |
|
| Q |
212 |
tagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaagctta |
311 |
Q |
| |
|
||||||||||||| || || ||||| |||||||| || |||||||| || || |||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51874389 |
tagcaggaggttctctctccataggttttgcaaacataactggttattctgtcctatctggtttagccatgggaatggaacccatttgtggacaagctta |
51874488 |
T |
|
| Q |
312 |
tggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttc |
380 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||| ||||| |
|
|
| T |
51874489 |
tggagctaaacaatggaagatacttggcttaactcttcaaagaaccgttcttttacttctttccacttc |
51874557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 10676353 - 10676415
Alignment:
| Q |
280 |
atgggaatggaaccaatttgtggacaagcttatggagcaaaacaatggaagatacttggctta |
342 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||| ||||||||||| ||| ||||| |
|
|
| T |
10676353 |
atgggaatggaacttatttgtggagaagctaatggagcaaagcaatggaagatgctttgctta |
10676415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University