View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_high_10 (Length: 401)
Name: NF16023_high_10
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 49700223 - 49699833
Alignment:
| Q |
1 |
tgatatatcacaaatccaaaaagaaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtgc |
100 |
Q |
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| T |
49700223 |
tgatatatcacaaatccaaaaagaaaatatccaaatattaattaacatcatagaaagaaatgaaataccaaatatagaacctatcaccgcaattaagtgc |
49700124 |
T |
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| Q |
101 |
atagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaaggtttaaaaaagattgtactcacatattgcctagttctgctt |
200 |
Q |
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| T |
49700123 |
atagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaaggtttaaaaaagattgtactcacatattgcctagttctgctt |
49700024 |
T |
|
| Q |
201 |
gtggcatgaacagctaaatttgtcatgtttccaatgatgtatgcagtaagtccctgattaaagagtatatagaaaatgtcaaatagcatctcccttgtat |
300 |
Q |
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| T |
49700023 |
gtggcatgaacagctagatttgtcatgtttccaatgatgtatgcagtaagtccctgattaaagagtataaagaaaatgtcaaatagcatctcccttgtat |
49699924 |
T |
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| Q |
301 |
ttacaggatgcagatcaccataaccaactgctgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttctt |
391 |
Q |
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| T |
49699923 |
ttacaggatgcagatcaccataaccaactgttgaaacagtgataatggaccagtatactgatgctacgtagagagacatcgtattcttctt |
49699833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 2243335 - 2243404
Alignment:
| Q |
267 |
atatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgctgaaa |
336 |
Q |
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| T |
2243335 |
atataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaa |
2243404 |
T |
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