View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_high_12 (Length: 388)
Name: NF16023_high_12
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 41345442 - 41345086
Alignment:
| Q |
15 |
atgaatggttagaagcaaaaagggaaaaacagcgtcgtccacgatatcgatcttctcgtagaccaagatccgaaatgggtaatatggtaatggaaacaac |
114 |
Q |
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| T |
41345442 |
atgaatggttagaagcaaaaagggaaaaacagcgtcgtccacgatatcgatcttctcgtagaccaagatccgaaatgggtaatatgataatggaaacaac |
41345343 |
T |
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| Q |
115 |
tccattatcagtgaatgaaatagcaaccattgttccggaaacgagtattaatcctgaccagagtttgccaatagaaacagctccatcgtcaatgaacgaa |
214 |
Q |
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| T |
41345342 |
tccattatcagtgaatgaaatagcaaccattgttccggaaacgagtattaatcctgaccagagtttgccaatagaaacagctccatcatcaatgaacgaa |
41345243 |
T |
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| Q |
215 |
acaagcaatgttcaacaaacaagtcataatcaggaacatgaaactccaagcgcaactgcggggaatgcatcaatgaatgtaacagatattgatgttccag |
314 |
Q |
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| T |
41345242 |
acaagcaatgttcaacaaacaagtcataatcaggaacatgaaactccaagcgcaactgcggggaatgcatcaatgaatgtaacagatattgatgttccag |
41345143 |
T |
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| Q |
315 |
aaataaataataatcaagaacatagtttgacgatggaaacaacttcatcatcaattc |
371 |
Q |
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| T |
41345142 |
aaataaataataatcaggaacatagtttgacgatggaaacaacttcatcatcaattc |
41345086 |
T |
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