View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16023_high_17 (Length: 324)

Name: NF16023_high_17
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16023_high_17
NF16023_high_17
[»] chr5 (2 HSPs)
chr5 (12-309)||(37150009-37150306)
chr5 (255-299)||(18970264-18970308)
[»] chr3 (3 HSPs)
chr3 (256-300)||(14194953-14194997)
chr3 (252-300)||(30843834-30843882)
chr3 (252-302)||(621631-621681)
[»] chr1 (1 HSPs)
chr1 (104-159)||(6646612-6646667)
[»] chr4 (2 HSPs)
chr4 (252-300)||(4161650-4161698)
chr4 (256-300)||(17381580-17381624)
[»] chr7 (2 HSPs)
chr7 (261-300)||(11458907-11458946)
chr7 (256-300)||(12927837-12927881)
[»] chr8 (2 HSPs)
chr8 (252-300)||(21215926-21215974)
chr8 (251-299)||(40680059-40680107)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 37150306 - 37150009
Alignment:
Q  12 atgaagaaaaaattgaaattgaaggactaggaagtttaaaagtaatgattgatgaattgggggtgggagtaacagactgatagagacagaaaaaccgata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37150306 atgaagaaaaaattgaaattgaaggactaggaagtttaaaagtaatgattgatgaattgggggtgggagtaacagactgatagagacagaaaaaccgata 37150207  T
Q  112 tagtccaagtctcactagtagggattcaaatgatttagtatagaatccaacacaaataataaattgctcaaatttttagtcaaatacattatctttgttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37150206 tagtccaagtctcactagtagggattcaaatgatttagtatagaatccaacacagataataaattgctcaaatttttagtcaaatacattatctttgttc 37150107  T
Q  212 gactttttagtcaaatacattaactttgttcatcttgtacaatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtcgttcattag 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37150106 gactttttagtcaaatacattagctttgttcatcttgtacaatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtcgttcattag 37150009  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 18970308 - 18970264
Alignment:
Q  255 gagtagccacaatagtcctttaatgtagcaaaattccaaaatagt 299  Q
    |||||||||||||||||||| |||||| | |||||| ||||||||    
T  18970308 gagtagccacaatagtccttgaatgtatccaaattcaaaaatagt 18970264  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 14194997 - 14194953
Alignment:
Q  256 agtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  14194997 agtagccacaatagtcctttaatgtatcaaaatttcaaaatagtc 14194953  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 30843882 - 30843834
Alignment:
Q  252 aatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    ||||||||| ||||||||||  |||||||| ||||||||||||||||||    
T  30843882 aatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtc 30843834  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 621631 - 621681
Alignment:
Q  252 aatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtcgt 302  Q
    ||||||||| |||||||||||||| ||| | ||||||| ||||||||||||    
T  621631 aatgagtagtcacaatagtcctttgatgaatcaaaatttcaaaatagtcgt 621681  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 6646612 - 6646667
Alignment:
Q  104 aaccgatatagtccaagtctcactagtagggattcaaatgatttagtatagaatcc 159  Q
    |||||||| | |||||||||||||||||||||||| ||||| |||| |||||||||    
T  6646612 aaccgataaaatccaagtctcactagtagggattctaatgaattagaatagaatcc 6646667  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 4161650 - 4161698
Alignment:
Q  252 aatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  4161650 aatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtc 4161698  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 17381624 - 17381580
Alignment:
Q  256 agtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    ||||| ||||||||||| | |||||| ||||||||||||||||||    
T  17381624 agtagtcacaatagtccctcaatgtatcaaaattccaaaatagtc 17381580  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 11458907 - 11458946
Alignment:
Q  261 ccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  11458907 ccacaatagtccttcaatgtagcaaagttccaaaatagtc 11458946  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 12927881 - 12927837
Alignment:
Q  256 agtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    ||||| |||||||||||||  ||||| ||||||||||||||||||    
T  12927881 agtagtcacaatagtccttcgatgtatcaaaattccaaaatagtc 12927837  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 21215926 - 21215974
Alignment:
Q  252 aatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagtc 300  Q
    ||||||||||||||||||||||| ||||||   ||||| ||||||||||    
T  21215926 aatgagtagccacaatagtccttcaatgtattgaaatttcaaaatagtc 21215974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 40680059 - 40680107
Alignment:
Q  251 caatgagtagccacaatagtcctttaatgtagcaaaattccaaaatagt 299  Q
    ||||||||||| | ||||||| ||||||||| |||||||| ||||||||    
T  40680059 caatgagtagcaataatagtcttttaatgtatcaaaattctaaaatagt 40680107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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