View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_high_18 (Length: 304)
Name: NF16023_high_18
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 37999523 - 37999800
Alignment:
| Q |
12 |
atgaatgcactaggaatttgtgaagaaattaacctgaacggagttgaacacgaaattgaaagaaccctctgttgttttattgatgacgttcgttgcctca |
111 |
Q |
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| T |
37999523 |
atgaatgcactaggaatttgtgaagaaattaacctgaacggagttgaacacgaaattgaaagaaccctctgttgttttattgatgacgttcgttgcctca |
37999622 |
T |
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| Q |
112 |
ttttcttcattgctgcaacacttttctccattgtccaacttggtttttagagacgtagacacgttgggactaattacaattcggtaaacgacgaagagcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999623 |
ttttcttcattgctgcaacacttttctccattgtccaacttggtttttagagacgtagacacgttgggactaattacaattcggtaaacgacgaagagcg |
37999722 |
T |
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| Q |
212 |
ttaagaatgtggcgattgtgaacaattccattgtgtagtttgttattgaatccaataccatggttgtgtagcagaatc |
289 |
Q |
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| T |
37999723 |
ttaagaatgtggcgattgtgaacaattccattgtgtagtttgttattgaatccaatactatggttgtgtagcagaatc |
37999800 |
T |
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