View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16023_low_1 (Length: 933)

Name: NF16023_low_1
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16023_low_1
NF16023_low_1
[»] chr3 (11 HSPs)
chr3 (781-914)||(29856802-29856935)
chr3 (781-914)||(30227304-30227437)
chr3 (779-914)||(30201129-30201264)
chr3 (802-914)||(30214676-30214787)
chr3 (779-914)||(29648990-29649125)
chr3 (777-875)||(29751846-29751944)
chr3 (793-914)||(30238987-30239111)
chr3 (779-890)||(29712960-29713071)
chr3 (779-827)||(30223140-30223188)
chr3 (780-896)||(36333932-36334048)
chr3 (649-704)||(36333792-36333847)
[»] chr6 (2 HSPs)
chr6 (787-912)||(5569421-5569546)
chr6 (803-912)||(5574415-5574524)
[»] chr1 (2 HSPs)
chr1 (793-891)||(16955668-16955766)
chr1 (794-878)||(16966187-16966271)
[»] chr5 (2 HSPs)
chr5 (779-914)||(11634920-11635055)
chr5 (793-854)||(25784285-25784346)
[»] chr7 (2 HSPs)
chr7 (780-911)||(16644731-16644862)
chr7 (780-911)||(17619092-17619223)
[»] chr8 (2 HSPs)
chr8 (781-890)||(1152915-1153024)
chr8 (134-175)||(38285719-38285760)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 781 - 914
Target Start/End: Complemental strand, 29856935 - 29856802
Alignment:
Q  781 atgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagccttt 880  Q
    ||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||| ||||||| ||||| | || |||||||| |||||||||||||    
T  29856935 atgtgaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagccttt 29856836  T
Q  881 gaaggatgtttgctgtgatgtctctaggaagttc 914  Q
    ||||||||||||||||||| |||||  |||||||    
T  29856835 gaaggatgtttgctgtgatttctctcagaagttc 29856802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 781 - 914
Target Start/End: Complemental strand, 30227437 - 30227304
Alignment:
Q  781 atgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagccttt 880  Q
    |||| |||||| ||||||||||||||||| ||||| || |||||| |||||||||| | ||||||| ||||||| ||||| || |||||| |||||||||    
T  30227437 atgtaaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagccttt 30227338  T
Q  881 gaaggatgtttgctgtgatgtctctaggaagttc 914  Q
    |||| ||||||| |||||||||||||||||||||    
T  30227337 gaagaatgtttgttgtgatgtctctaggaagttc 30227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 779 - 914
Target Start/End: Complemental strand, 30201264 - 30201129
Alignment:
Q  779 tcatgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcct 878  Q
    |||| ||||||||  |||||||||||||||| ||||| || ||||||||||||||||| | ||||||| ||||||| |||||||||||||||  ||||||    
T  30201264 tcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcct 30201165  T
Q  879 ttgaaggatgtttgctgtgatgtctctaggaagttc 914  Q
    |||||| |||||| |||| |||||| ||||||||||    
T  30201164 ttgaagaatgttttctgtaatgtctttaggaagttc 30201129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 802 - 914
Target Start/End: Complemental strand, 30214787 - 30214676
Alignment:
Q  802 agaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctttgaaggatgtttgctgtgatgt 901  Q
    |||||||| ||||| || ||||||||||||||||| | ||||||| ||||||| ||||| ||||||||| |||| |||||||  ||||||| ||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaagtctttgaa-aatgtttgttgtgatgt 30214689  T
Q  902 ctctaggaagttc 914  Q
    |||||||||||||    
T  30214688 ctctaggaagttc 30214676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 779 - 914
Target Start/End: Complemental strand, 29649125 - 29648990
Alignment:
Q  779 tcatgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcct 878  Q
    ||||||||||||||||||||||||||||||| || || || |||||| |||||||||| | | | ||| || |||| ||||||||||  |||||||  |     
T  29649125 tcatgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactcc 29649026  T
Q  879 ttgaaggatgtttgctgtgatgtctctaggaagttc 914  Q
    ||||||||||||   |||||||||||| ||||||||    
T  29649025 ttgaaggatgttaattgtgatgtctcttggaagttc 29648990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 875
Target Start/End: Complemental strand, 29751944 - 29751846
Alignment:
Q  777 ggtcatgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaag 875  Q
    |||||| | |||||||| ||||||||||||||| ||||| |  |||||||| ||||||||||  | || | ||||||| |||||||||| |||||||||    
T  29751944 ggtcatcttaatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacggtatcaag 29751846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 793 - 914
Target Start/End: Complemental strand, 30239111 - 30238987
Alignment:
Q  793 cgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctttgaaggatgtttg 892  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| | | | ||| |||| ||||  |||||| || ||  ||||||||| || |||||||    
T  30239111 cgccacatgagaggatccttgcatatgttccaccatagaggacatactaggcatgcactagtgatgatttcagtgatagaaagcctttggagaatgtttg 30239012  T
Q  893 ctg---tgatgtctctaggaagttc 914  Q
     ||   |||||||||| ||||||||    
T  30239011 ttgcgatgatgtctcttggaagttc 30238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 779 - 890
Target Start/End: Complemental strand, 29713071 - 29712960
Alignment:
Q  779 tcatgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcct 878  Q
    |||||||||||||||||||||| |||||||| ||||| || |||| ||| | || |||||  | || | ||||||| ||||||||||  |||||||| ||    
T  29713071 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagaacaaacattacgtgcacttgtcacaatttcaacagtatcaagtct 29712972  T
Q  879 ttgaaggatgtt 890  Q
    ||| || |||||    
T  29712971 ttggagtatgtt 29712960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 779 - 827
Target Start/End: Complemental strand, 30223188 - 30223140
Alignment:
Q  779 tcatgtgaatggtacgccacatgagaggatctttgcatatcttccacca 827  Q
    ||||||||||||| ||||||||||||||||| ||||| || ||||||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 780 - 896
Target Start/End: Original strand, 36333932 - 36334048
Alignment:
Q  780 catgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctt 879  Q
    |||| |||| || ||||||||||||||||| ||||| || ||||||||| | ||||| | | | ||  |||| || |||||||| |  ||| |||||||     
T  36333932 catgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagcctc 36334031  T
Q  880 tgaaggatgtttgctgt 896  Q
    |||||||||||||||||    
T  36334032 tgaaggatgtttgctgt 36334048  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 36333792 - 36333847
Alignment:
Q  649 tcagctatgcacttaaggagatcatctgtgcaaaaatgctcaatatcaatatcttc 704  Q
    ||||||||||| ||||||||||||||  |||||||| ||| ||||||||| |||||    
T  36333792 tcagctatgcatttaaggagatcatcgatgcaaaaacgcttaatatcaatgtcttc 36333847  T

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Target: chr6 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 787 - 912
Target Start/End: Original strand, 5569421 - 5569546
Alignment:
Q  787 atggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctttgaagga 886  Q
    |||||||||||||  |||||||| ||||| || ||||||||||||||||| | ||||||| ||||||| || |  ||||| |||||||||||||||||||    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  887 tgtttgctgtgatgtctctaggaagt 912  Q
    ||||  | ||||||||||| ||||||    
T  5569521 tgttcaccgtgatgtctcttggaagt 5569546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 803 - 912
Target Start/End: Original strand, 5574415 - 5574524
Alignment:
Q  803 gaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctttgaaggatgtttgctgtgatgtc 902  Q
    ||||||| ||||| || ||||||||||||||||| | ||||||| ||||||| || |  ||||| |||||||||||||||||||||||  | ||||||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgtc 5574514  T
Q  903 tctaggaagt 912  Q
    ||| ||||||    
T  5574515 tcttggaagt 5574524  T

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Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 793 - 891
Target Start/End: Original strand, 16955668 - 16955766
Alignment:
Q  793 cgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctttgaaggatgttt 891  Q
    ||||||||||||||||| ||||| || |||||||||| ||| || | ||||||||||||||||||||||||||| ||||||||||| || || ||||||    
T  16955668 cgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgttt 16955766  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 794 - 878
Target Start/End: Original strand, 16966187 - 16966271
Alignment:
Q  794 gccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcct 878  Q
    |||||||| ||||||| ||||| || |||||||||| |||||| | |||||||||||||||||| |||||||| |||||||||||    
T  16966187 gccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaagcct 16966271  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 779 - 914
Target Start/End: Complemental strand, 11635055 - 11634920
Alignment:
Q  779 tcatgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcct 878  Q
    ||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||| | |  |||| || || | || || |||||||||||||||||    
T  11635055 tcatgcgaatggtacgccacatgagaggatccttgcatatgctccaccatagaggacatactatacatgcattttttactatgtcaatggtatcaagcct 11634956  T
Q  879 ttgaaggatgtttgctgtgatgtctctaggaagttc 914  Q
      |||| ||||||| | |||||||| | ||||||||    
T  11634955 ccgaagaatgtttgttatgatgtctgtcggaagttc 11634920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 793 - 854
Target Start/End: Original strand, 25784285 - 25784346
Alignment:
Q  793 cgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgt 854  Q
    |||||||||| ||||||||| ||||| |||||||||||||| || | |||||||||||||||    
T  25784285 cgccacatgaaaggatctttacatatattccaccatagagggcacacttgacatacacttgt 25784346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 780 - 911
Target Start/End: Original strand, 16644731 - 16644862
Alignment:
Q  780 catgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctt 879  Q
    |||||||||||| |||||||||||||| || ||||| || ||||||||||||| ||| | | |  || ||||||| ||||||||||  | || |||||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctt 16644830  T
Q  880 tgaaggatgtttgctgtgatgtctctaggaag 911  Q
    ||||| ||||||  |||||| |||||||||||    
T  16644831 tgaagaatgttttgtgtgatatctctaggaag 16644862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 780 - 911
Target Start/End: Original strand, 17619092 - 17619223
Alignment:
Q  780 catgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagcctt 879  Q
    |||||||||||| |||||||||||||| || ||||| || ||||||||||||| ||| | | |  || ||||||| ||||||||||  | || |||||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctt 17619191  T
Q  880 tgaaggatgtttgctgtgatgtctctaggaag 911  Q
    ||||| ||||||  |||||| |||||||||||    
T  17619192 tgaagaatgttttgtgtgatatctctaggaag 17619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 781 - 890
Target Start/End: Original strand, 1152915 - 1153024
Alignment:
Q  781 atgtgaatggtacgccacatgagaggatctttgcatatcttccaccatagaggacaaatttgacatacacttgtgacaatttcaatggtatcaagccttt 880  Q
    |||||||||||||||||||| |||||||| ||||| || | |||||| ||||||||||  | || | ||||||| ||||||||||  ||||| || ||||    
T  1152915 atgtgaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaacattacgtgcacttgttacaatttcaacagtatccagtcttt 1153014  T
Q  881 gaaggatgtt 890  Q
    ||||||||||    
T  1153015 gaaggatgtt 1153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 38285760 - 38285719
Alignment:
Q  134 aagagtttcaagaagaaggcatccatcaagaatcgcaagcaa 175  Q
    ||||| |||||||||| |||||||||||||||| ||||||||    
T  38285760 aagagattcaagaagagggcatccatcaagaatagcaagcaa 38285719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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