View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16023_low_2 (Length: 652)

Name: NF16023_low_2
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16023_low_2
NF16023_low_2
[»] chr5 (6 HSPs)
chr5 (22-220)||(38123644-38123842)
chr5 (23-183)||(38115330-38115490)
chr5 (266-337)||(38123900-38123971)
chr5 (332-404)||(38115747-38115820)
chr5 (515-614)||(38115891-38115990)
chr5 (410-495)||(38124026-38124111)
[»] chr2 (3 HSPs)
chr2 (266-495)||(25226215-25226449)
chr2 (516-640)||(25226443-25226568)
chr2 (306-393)||(32266674-32266761)
[»] chr6 (1 HSPs)
chr6 (22-181)||(14916086-14916245)
[»] chr7 (2 HSPs)
chr7 (588-640)||(43721758-43721810)
chr7 (346-392)||(43721981-43722027)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 38123644 - 38123842
Alignment:
Q  22 ttgtcatctgaatgtcacttcactgaatactatttgctgatttacaggggttcaaagcaagcaactatggctctgaaccaatgctacgtaactgtggcat 121  Q
    ||||| ||||||||||||||||||||||  | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38123644 ttgtcgtctgaatgtcacttcactgaattatttttgctgatttacaggcgttgaaagcaagcaactatggctctgaaccaatgctacgtaactgtggcat 38123743  T
Q  122 ttcaataacgcccgatttcacacaagttgatgggagggttttgcaggctccaagggtattgttactttatcaccgttttcaagaaaatgccacaataaa 220  Q
    |||||||||  |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  38123744 ttcaataacatccgagttcacccaagttgatgggagggttttgcaggctccacgggtattgttactttatcaccgttttcaagaaaaagccacaataaa 38123842  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 38115330 - 38115490
Alignment:
Q  23 tgtcatctgaatgtcacttcactgaatactatttgctgatttacaggggttcaaagcaagcaactatggctctgaaccaatgctacgtaactgtggcatt 122  Q
    |||||| ||| ||||||||| ||||||| ||||| ||||||||||||  || ||| ||||  |||||||||||||||| ||||||||||||||||| |||    
T  38115330 tgtcatatgattgtcacttcgctgaatattattttctgatttacaggccttaaaaacaagtgactatggctctgaacccatgctacgtaactgtggaatt 38115429  T
Q  123 tcaataacgcccgatttcacacaagttgatgggagggttttgcaggctccaagggtattgt 183  Q
    ||||||||  | |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  38115430 tcaataacatctgggttcacacaagttgatgggagggttttgcaggctccaagggtattgt 38115490  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 38123900 - 38123971
Alignment:
Q  266 ttttataatttacttgtgttcccttaaattcttttgatgattgaaaaagaaacatttgccaaattacttttt 337  Q
    ||||| ||||||| ||||||||||||| |||| ||||||||||| ||||| |||||| ||||||||||||||    
T  38123900 ttttaaaatttacatgtgttcccttaacttctcttgatgattgagaaagagacattttccaaattacttttt 38123971  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 38115747 - 38115820
Alignment:
Q  332 ctttttgaagaaaattttccgttcct-gtttgatagttatagtaagctcacatggctgtgcccaattcttttca 404  Q
    |||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||| | |||||||    
T  38115747 ctttttcaagaaaattttctgttcctagtttgatagttatggtaagctcacatggcagtgcccattgcttttca 38115820  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 38115891 - 38115990
Alignment:
Q  515 tatcagtgcgctgaatgtgctgccaggattgcttttgtccgcttaaaattgtgtagcaattaattgtttgctttgtagtaagaccatctgcaagctgaat 614  Q
    |||||||  |||||||||||| |  || ||| || |||| | || ||| |||||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  38115891 tatcagtctgctgaatgtgctccttgggttgattctgtcggtttgaaaatgtgtagcaattaattgttttctctgtagtatgaccatctgtaagctgaat 38115990  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 38124026 - 38124111
Alignment:
Q  410 acctcttttcttatttgttgagtttaatgttgtccaacagtacattaaactgataggattcactctaatttgactcaatatcagtg 495  Q
    ||||||||| ||||||  | | ||||||||||||||||    ||||| |||| |||||||||||| ||||| | ||||||||||||    
T  38124026 acctcttttattattttgttaatttaatgttgtccaacgaagcattatactgttaggattcactcaaattttattcaatatcagtg 38124111  T

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Target: chr2 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 266 - 495
Target Start/End: Original strand, 25226215 - 25226449
Alignment:
Q  266 ttttataatttacttgtgttcccttaaattcttttgatgattgaaaaagaaacatttgccaaattactttttgaagaaaattttccgttcctgtttgata 365  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  25226215 ttttaaaatttacttgtgttcccttaacttctcttgatgattgaaaaagaaacatttgccaaattactttttaaagaaatttttccattcctgtttgata 25226314  T
Q  366 gttatagtaagctcacatg-----gctgtgcccaattcttttcataatcacctcttttcttatttgttgagtttaatgttgtccaacagtacattaaact 460  Q
    |||||||||| ||||||||     |||||| ||||| |||||||  |  ||||||| | |||||   ||| ||||||||| |||||||  ||||||||||    
T  25226315 gttatagtaacctcacatggcagtgctgtggccaatgcttttcaccactacctcttctattattctgtgaatttaatgttttccaacaaaacattaaact 25226414  T
Q  461 gataggattcactctaatttgactcaatatcagtg 495  Q
    | |||||||||||| || || |||||  |||||||    
T  25226415 gttaggattcactcgaaatttactcatcatcagtg 25226449  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 516 - 640
Target Start/End: Original strand, 25226443 - 25226568
Alignment:
Q  516 atcagtgcgctgaatgtgctgccaggattgcttttgtccgcttaaaattgtgtagcaattaattgtttgctttgtagtaagaccatctgcaagctgaata 615  Q
    ||||||| |||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  25226443 atcagtgtgctgaatgtgctgctaggattgcttctgtcagcttgaaattgtgtagcaattaattgttttctttgtagtaagaccatctgcaagctgaatg 25226542  T
Q  616 cattctctc-ttgttttacatatatt 640  Q
    ||  ||||| ||||||||||||||||    
T  25226543 cacgctctctttgttttacatatatt 25226568  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 32266761 - 32266674
Alignment:
Q  306 ttgaaaaagaaacatttgccaaattactttttgaagaaaattttccgttcctgtttgatagttatagtaagctcacatggctgtgccc 393  Q
    |||| ||||||| |||| ||||||||||||||| ||||  ||||| |||||||||||||||||||| || |||||||||| |||||||    
T  32266761 ttgataaagaaagattttccaaattactttttggagaattttttctgttcctgtttgatagttatactacgctcacatggttgtgccc 32266674  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 14916086 - 14916245
Alignment:
Q  22 ttgtcatctgaatgtcacttcactgaatactatttgctgatttacaggggttcaaagcaagcaactatggctctgaaccaatgctacgtaactgtggcat 121  Q
    ||||||| | ||||| |||| ||| |||  ||||| |||||| ||||| |||  || |||||||||| |||||||| || |||||||||| |||||||||    
T  14916086 ttgtcatataaatgttactttactaaatgttattttctgattcacaggcgttgcaaacaagcaactacggctctgagcccatgctacgtacctgtggcat 14916185  T
Q  122 ttcaataacgcccgatttcacacaagttgatgggagggttttgcaggctccaagggtatt 181  Q
    | ||||||  ||  || | |||||||||||||||||||||||||||||||||||||||||    
T  14916186 tacaataaaaccgcatcttacacaagttgatgggagggttttgcaggctccaagggtatt 14916245  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 640
Target Start/End: Complemental strand, 43721810 - 43721758
Alignment:
Q  588 tgtagtaagaccatctgcaagctgaatacattctctcttgttttacatatatt 640  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||    
T  43721810 tgtagtacgaccatctgcaagctgaatccatactctcttgttttagatatatt 43721758  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 43722027 - 43721981
Alignment:
Q  346 ttttccgttcctgtttgatagttatagtaagctcacatggctgtgcc 392  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  43722027 ttttctgttcctgtttgatagatatagtaagctcatatggctgtgcc 43721981  T

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