View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_23 (Length: 268)
Name: NF16023_low_23
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 36360175 - 36360415
Alignment:
| Q |
11 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
110 |
Q |
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| T |
36360175 |
aggaccagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
36360274 |
T |
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| Q |
111 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgg |
210 |
Q |
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| T |
36360275 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttatttttttagaaaatca-ttgatgttaatagaaaaccaaattagtatcgtatgg |
36360373 |
T |
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| Q |
211 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtat |
252 |
Q |
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| T |
36360374 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtat |
36360415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 36348911 - 36349031
Alignment:
| Q |
11 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc------cctgacgaacatactacttcccaagcc |
104 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| || | ||||| ||||||||| ||||||||||| |
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| T |
36348911 |
aggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagcc |
36349010 |
T |
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| Q |
105 |
ttcttgaatgcctgaatatta |
125 |
Q |
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| T |
36349011 |
ttctcgaatgcctgaatatta |
36349031 |
T |
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