View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_25 (Length: 242)
Name: NF16023_low_25
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42648106 - 42648026
Alignment:
| Q |
1 |
ctttcttcaagtacagtgatgcctgtgaatctgcacaataatttgctaagatcagaggaatacacatgattgaaaaagcag |
81 |
Q |
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| T |
42648106 |
ctttcttgaagtacagtgatgcctgtgaatctgcacaaaaatttgctaagatcagaggaatacacatgattgaaaaagcag |
42648026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 42647116 - 42647076
Alignment:
| Q |
193 |
cctacaaagcacaaaatggttgagaaaatgattgagaatta |
233 |
Q |
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| T |
42647116 |
cctacaaagcacaaaatggttgagaaaatgattgagaatta |
42647076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 42647199 - 42647170
Alignment:
| Q |
80 |
agtatggttagatgttaaatctgcactaat |
109 |
Q |
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| T |
42647199 |
agtatggttagatgttaaatctgcactaat |
42647170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 38387954 - 38387994
Alignment:
| Q |
193 |
cctacaaagcacaaaatggttgagaaaatgattgagaatta |
233 |
Q |
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| T |
38387954 |
cctacaaagcacaaaatggttgagaaaatgattgagaatta |
38387994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 38387893 - 38387928
Alignment:
| Q |
157 |
tatgtaatatacaaagcactatatagttctacagtg |
192 |
Q |
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| T |
38387893 |
tatgtaatatacaaagcactatatagttctacagtg |
38387928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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