View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_3 (Length: 580)
Name: NF16023_low_3
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 563
Target Start/End: Complemental strand, 49672389 - 49671842
Alignment:
| Q |
14 |
aatatcaaatgagaagtcctaacattacaagagacgaagnnnnnnntttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagct |
113 |
Q |
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| T |
49672389 |
aatatcaaatgagaagtcctaacattacaagagacgaagaaaaaaatttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagct |
49672290 |
T |
|
| Q |
114 |
caattgcttggttcgaaggaagcaaataaaatctcatataaaagaaaagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgccc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672289 |
caattgcttggttcgaaggaagcaaataaaatctcatataaaagaagagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgccc |
49672190 |
T |
|
| Q |
214 |
ttaatatagttgtaacaaaaccctttttgtataacatattatctaagattattnnnnnnnntatatatactacaaaagttgggggagggaagatacatta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
49672189 |
ttaatatagttgtaacaaaaccctttttgtataacatattatctaagattattaaaaaaaatatatat--tacaaaagttgggggagggaagatacatta |
49672092 |
T |
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| Q |
314 |
tatttaaactcgtttacaatgacaatagagctaaaatctaatcacttgtataccaaaagtaaaaagtgtgccctcttattatgaatgacaatgtttaaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672091 |
tatttaaactcgtttacaatgacaatagagctaaaatctaatcacttgtataccaaaagtaaaaagtgtgccctcttattatgaatgacaatgtttaaat |
49671992 |
T |
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| Q |
414 |
gctgcatatcagtaattagtttgcaaggctatgctatcaacgaccactggtattagaaggtactggatttactatcccatttatcaaccacagctttagg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49671991 |
gctgcatatcagtaattagtttgcaaggctatgctatcaacgaccactggtattagaaggtactggatttactatcccatttatcaaccacagctttagg |
49671892 |
T |
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| Q |
514 |
tgatggctgtggcatcattttttggaatagtccaatctcaatctcattcc |
563 |
Q |
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| T |
49671891 |
tgatggctgtggcatcattttttggaatagtccaatctcaatctcattcc |
49671842 |
T |
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