View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16023_low_30 (Length: 226)

Name: NF16023_low_30
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16023_low_30
NF16023_low_30
[»] chr5 (20 HSPs)
chr5 (1-226)||(13130959-13131184)
chr5 (4-226)||(17195237-17195467)
chr5 (10-226)||(18920835-18921056)
chr5 (2-199)||(25360459-25360663)
chr5 (2-226)||(36311821-36312051)
chr5 (10-135)||(2599447-2599575)
chr5 (10-113)||(12805944-12806053)
chr5 (10-113)||(12743126-12743235)
chr5 (21-71)||(18921351-18921401)
chr5 (118-226)||(19748169-19748276)
chr5 (10-103)||(33371069-33371167)
chr5 (84-133)||(12742883-12742932)
chr5 (10-113)||(12743459-12743568)
chr5 (84-133)||(12805701-12805750)
chr5 (77-113)||(12806353-12806389)
chr5 (118-226)||(15798078-15798186)
chr5 (36-103)||(17366400-17366472)
chr5 (86-184)||(1400264-1400366)
chr5 (71-107)||(3459297-3459333)
chr5 (86-133)||(17366684-17366732)
[»] chr4 (27 HSPs)
chr4 (8-219)||(17292071-17292281)
chr4 (10-226)||(13866365-13866587)
chr4 (10-226)||(13850851-13851073)
chr4 (80-226)||(23124484-23124630)
chr4 (10-199)||(31324303-31324497)
chr4 (84-226)||(18412697-18412839)
chr4 (83-199)||(49817159-49817275)
chr4 (84-184)||(17211410-17211511)
chr4 (83-199)||(3393433-3393549)
chr4 (10-100)||(13854979-13855075)
chr4 (2-77)||(23620448-23620523)
chr4 (10-80)||(13866751-13866821)
chr4 (83-135)||(10312465-10312517)
chr4 (86-226)||(11288397-11288536)
chr4 (10-110)||(18413031-18413137)
chr4 (86-224)||(24606856-24606995)
chr4 (76-184)||(49423709-49423821)
chr4 (86-184)||(957416-957518)
chr4 (77-113)||(9717842-9717878)
chr4 (77-113)||(17211803-17211839)
chr4 (145-199)||(20759159-20759213)
chr4 (145-199)||(20765550-20765604)
chr4 (13-71)||(31324663-31324721)
chr4 (77-113)||(3393810-3393846)
chr4 (77-113)||(21411556-21411592)
chr4 (77-113)||(21411853-21411889)
chr4 (71-107)||(46816188-46816224)
[»] chr2 (16 HSPs)
chr2 (2-226)||(31991806-31992036)
chr2 (9-199)||(27650304-27650500)
chr2 (77-226)||(18036113-18036262)
chr2 (10-226)||(15891525-15891747)
chr2 (86-184)||(33404163-33404261)
chr2 (84-184)||(16253603-16253703)
chr2 (10-100)||(15891275-15891371)
chr2 (122-217)||(11679084-11679179)
chr2 (119-217)||(11718870-11718968)
chr2 (83-133)||(20148334-20148384)
chr2 (77-226)||(42241049-42241199)
chr2 (87-133)||(6902182-6902228)
chr2 (10-109)||(16253897-16254002)
chr2 (10-113)||(16707867-16707974)
chr2 (145-195)||(18878641-18878691)
chr2 (76-116)||(33404527-33404567)
[»] chr6 (16 HSPs)
chr6 (2-226)||(28051473-28051698)
chr6 (77-226)||(17465289-17465438)
chr6 (10-226)||(20192424-20192646)
chr6 (10-226)||(20242008-20242230)
chr6 (10-226)||(22135992-22136214)
chr6 (10-226)||(22143345-22143567)
chr6 (13-195)||(34134788-34134975)
chr6 (13-175)||(14482707-14482874)
chr6 (86-176)||(14115193-14115283)
chr6 (10-61)||(20241794-20241845)
chr6 (10-61)||(22135778-22135829)
chr6 (10-61)||(22143131-22143182)
chr6 (10-71)||(14482479-14482540)
chr6 (76-116)||(14123439-14123479)
chr6 (11-65)||(4913681-4913735)
chr6 (151-199)||(2402333-2402381)
[»] chr7 (14 HSPs)
chr7 (9-226)||(3380554-3380777)
chr7 (36-226)||(150192-150388)
chr7 (82-199)||(1642546-1642663)
chr7 (36-199)||(18149658-18149828)
chr7 (111-226)||(11824797-11824912)
chr7 (2-71)||(11824914-11824983)
chr7 (5-116)||(5282334-5282451)
chr7 (10-112)||(21614442-21614549)
chr7 (77-176)||(2356443-2356543)
chr7 (86-184)||(21614722-21614821)
chr7 (119-199)||(28066386-28066466)
chr7 (10-113)||(1642247-1642356)
chr7 (118-195)||(7414196-7414273)
chr7 (71-110)||(15337564-15337603)
[»] chr8 (4 HSPs)
chr8 (10-199)||(31171697-31171891)
chr8 (10-176)||(3589145-3589318)
chr8 (38-109)||(2923811-2923888)
chr8 (5-75)||(3009560-3009630)
[»] chr1 (16 HSPs)
chr1 (80-212)||(14772490-14772622)
chr1 (86-184)||(13283849-13283947)
chr1 (85-184)||(5765350-5765449)
chr1 (83-184)||(16532051-16532152)
chr1 (86-184)||(17697190-17697288)
chr1 (145-226)||(19262436-19262517)
chr1 (86-135)||(24363764-24363813)
chr1 (84-135)||(16081478-16081529)
chr1 (10-71)||(14772291-14772352)
chr1 (10-71)||(31451799-31451860)
chr1 (10-60)||(16081724-16081774)
chr1 (71-113)||(17686015-17686057)
chr1 (77-226)||(50068213-50068363)
chr1 (76-116)||(17685770-17685810)
chr1 (86-133)||(18842651-18842699)
chr1 (76-116)||(27034786-27034826)
[»] chr3 (19 HSPs)
chr3 (84-199)||(18440888-18441003)
chr3 (84-199)||(19485962-19486077)
chr3 (77-184)||(774292-774399)
chr3 (84-176)||(15637157-15637249)
chr3 (81-199)||(14265548-14265666)
chr3 (84-184)||(6754362-6754463)
chr3 (77-176)||(25887562-25887664)
chr3 (84-199)||(20375843-20375958)
chr3 (84-199)||(6464305-6464421)
chr3 (112-184)||(27187106-27187178)
chr3 (82-133)||(7954865-7954916)
chr3 (89-140)||(33449117-33449168)
chr3 (77-126)||(773986-774035)
chr3 (71-116)||(27187834-27187879)
chr3 (77-113)||(6464002-6464038)
chr3 (86-175)||(7954371-7954464)
chr3 (10-47)||(25887491-25887528)
chr3 (81-113)||(6754734-6754766)
chr3 (77-113)||(8632698-8632734)
[»] scaffold0121 (1 HSPs)
scaffold0121 (118-195)||(5484-5561)
[»] scaffold0859 (1 HSPs)
scaffold0859 (77-113)||(1173-1209)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13130959 - 13131184
Alignment:
Q  1 ttacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattcagaggtaagacaattgttgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13130959 ttacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagtcgttgtttaacaagtttgaccttattcagaggtaagacaattgttgta 13131058  T
Q  101 gttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgata 200  Q
    ||| |||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13131059 gttggaaggtgcattctctagctaatcacgatcttctagcaaaatcaaaatgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgata 13131158  T
Q  201 aacggaaccatgatgtgctaccaaaa 226  Q
    ||| ||||||||||||||||||||||    
T  13131159 aacagaaccatgatgtgctaccaaaa 13131184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 17195237 - 17195467
Alignment:
Q  4 cctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgtt 97  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||      ||| ||||||||||||||||    
T  17195237 cctaatttttgaaaggaacaataaaacttctgggtgaatgcttgagagttgttgtttaataggtttgaccttatccaatttcaaaggtaagacaattgtt 17195336  T
Q  98 gtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgac--aaacatat 195  Q
    |||||| |||| ||||||| |||||||||||||||||| ||||  | ||||| |||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  17195337 gtagttggaagatgcattccctacctaatcacgatcttctggcggaatcaaattgttgataatatctttagttgatctcagcaacgtgacaaaaacatat 17195436  T
Q  196 cgataaacggaaccatgatgtgctaccaaaa 226  Q
    |||||||||||||||||||||||| ||||||    
T  17195437 cgataaacggaaccatgatgtgctgccaaaa 17195467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18921056 - 18920835
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgttgtagtt 103  Q
    |||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||      ||| | ||||||||||||||||||||    
T  18921056 ttttgaaaggcacaataaaactttcgggtgaatgcttgagagctgttgtttaacaggtt-gaccttatccaatttcacaagtaagacaattgttgtagtt 18920958  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| |||||||||||||||||| ||||  | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  18920957 ggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcatc 18920858  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    ||||||||| |||||| ||||||    
T  18920857 ggaaccatgttgtgctgccaaaa 18920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 25360459 - 25360663
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattg 95  Q
    ||||||||||||||||||||||||| ||||||  ||||||||| |||||| ||||||||||||||||||||||||      | |||| ||||||||||||    
T  25360459 tacctaatttttgaaaggaacaatagaacttctgggtgaatgcatgagagttgttgtttaacaggtttgaccttatccaattccagatgtaagacaattg 25360558  T
Q  96 ttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgc-aacgtgacaaacata 194  Q
    ||||||||  |||||||||||||||||||||||||||||| || |  | ||||| |||||| || ||||| ||  |||||| || |||||||||||||||    
T  25360559 ttgtagttgaaaggtgcattctctacctaatcacgatcttctgacggaatcaaactgttgaaaacatcttcaggcgatctcagcaaacgtgacaaacata 25360658  T
Q  195 tcgat 199  Q
    |||||    
T  25360659 tcgat 25360663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 36311821 - 36312051
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattg 95  Q
    ||||||||||||||||||||||||| || ||   | |||| |||| | || |||||||||||| ||||||||||||      ||||||||||||||||||    
T  36311821 tacctaatttttgaaaggaacaatagaatttacggatgaaggcttcaaagttgttgtttaacaagtttgaccttatccaatttcagaggtaagacaattg 36311920  T
Q  96 ttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||| | | ||| | ||||||| ||||| ||  |||||| ||||||||||||||| ||    
T  36311921 ttgtagttggaaggtgcattccctacctaatcacgatcttctggcagaattaaactattgagaagatcttcaggcgatctcagcaacgtgacaaacacat 36312020  T
Q  196 cgataaacggaaccatgatgtgctaccaaaa 226  Q
     ||| ||||| | ||||||||| | ||||||    
T  36312021 tgatcaacgggaacatgatgtggtgccaaaa 36312051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 2599575 - 2599447
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||   |||||| ||||||||||||||||||| || ||||||  |||      ||||||||||||||||   ||||||||    
T  2599575 ttttgaaaggaacaataaaacttttgggtgaacgcttgagagctgttgtttagcaagtttgaatttatccaatttcagaggtaagacaa---ttgtagtt 2599479  T
Q  104 agaaggtgcattctctacctaatcacgatctt 135  Q
      ||||||||||||||||||||||||||||||    
T  2599478 gaaaggtgcattctctacctaatcacgatctt 2599447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 12805944 - 12806053
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| |||| ||||||| || |||||||||||||||||||||||||||| || ||||||  |||      |||||||||||||||||||||||||||    
T  12805944 ttttgaatggaataataaaaattaaaggtgaatgcttgagagctgttgtttagcaagtttgaatttaccacatttcagaggtaagacaattgttgtagtt 12806043  T
Q  104 agaaggtgca 113  Q
     |||||||||    
T  12806044 tgaaggtgca 12806053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 12743126 - 12743235
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| |||| ||||||| || |||||||||||||||||| ||||||||| || ||||||  |||      |||||||||||||||||||||||||||    
T  12743126 ttttgaatggaataataaaaattaaaggtgaatgcttgagagttgttgtttagcaagtttgaatttaccacatttcagaggtaagacaattgttgtagtt 12743225  T
Q  104 agaaggtgca 113  Q
     |||||||||    
T  12743226 tgaaggtgca 12743235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 18921351 - 18921401
Alignment:
Q  21 acaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  18921351 acaataaaacttccaggtgaatgcttgagagctgttgtttagcaggtttga 18921401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 19748276 - 19748169
Alignment:
Q  118 ctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtg 217  Q
    |||||||||||  ||||||||||  | ||||| ||||||||||||||| ||  |||||| ||||||| ||||||||||||||  |||||| |||| ||||    
T  19748276 ctacctaatcataatcttatggcggaatcaaattgttgagaatatcttcaggcgatctcagcaacgt-acaaacatatcgatccacggaaacatgttgtg 19748178  T
Q  218 ctaccaaaa 226  Q
    || ||||||    
T  19748177 ctgccaaaa 19748169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 33371069 - 33371167
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttg-----accttattcagaggtaagacaattgttgtagtt 103  Q
    ||||||| | ||||||||||||||   |||||||||||||||||||||||| ||| |||||     |||| ||||| |||||||| |||||||||||||    
T  33371069 ttttgaatgaaacaataaaacttccgagtgaatgcttgagagctgttgtttgacaagtttgaatttacctcattcaaaggtaagataattgttgtagtt 33371167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 12742932 - 12742883
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatc 133  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  12742932 gtaagacaattgttgtagttggaagatgcattccctacctaatcacgatc 12742883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 12743459 - 12743568
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| |||| || |||||||  |||||||||||||||||||| | |||| || ||||||  | |      |||||||||||||||||||||||||||    
T  12743459 ttttgaatggaataacaaaactttcaggtgaatgcttgagagctgctatttagcaagtttgaattcacgccatttcagaggtaagacaattgttgtagtt 12743558  T
Q  104 agaaggtgca 113  Q
     |||||||||    
T  12743559 tgaaggtgca 12743568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 12805750 - 12805701
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatc 133  Q
    ||||||||||||||| |||| |||| ||||||| ||||||||||||||||    
T  12805750 gtaagacaattgttgcagttggaagatgcattccctacctaatcacgatc 12805701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 12806353 - 12806389
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12806353 ttcagaggtaagacaattgttgtagtttgaaggtgca 12806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 15798078 - 15798186
Alignment:
Q  118 ctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtg 217  Q
    |||||||||||  ||||| ||||  | ||||| ||||||||||||||| ||   |||||  |||||||||||||||||| ||  |||||| |||| ||||    
T  15798078 ctacctaatcataatcttttggcggaatcaaactgttgagaatatcttcaggcaatctcatcaacgtgacaaacatatcaatccacggaaacatgttgtg 15798177  T
Q  218 ctaccaaaa 226  Q
    || ||||||    
T  15798178 ctgccaaaa 15798186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 17366472 - 17366400
Alignment:
Q  36 ggtgaatgcttgagagctgttgtttaacaggtttga-----ccttattcagaggtaagacaattgttgtagtt 103  Q
    ||||||||||||||||||| |||||| || ||||||     ||| |||||||||||||| |||||||||||||    
T  17366472 ggtgaatgcttgagagctgatgtttagcaagtttgaatttacctcattcagaggtaagataattgttgtagtt 17366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 1400264 - 1400366
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctc----tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaa 181  Q
    |||||||||||||||| | |||||||||||| |    |||||||| |||||||| ||||  | ||||| | ||||  ||||||| |||||||||| ||||    
T  1400264 aagacaattgttgtagctggaaggtgcattcactccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatcttcagttgatctcagcaa 1400363  T
Q  182 cgt 184  Q
    |||    
T  1400364 cgt 1400366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 3459297 - 3459333
Alignment:
Q  71 accttattcagaggtaagacaattgttgtagttagaa 107  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  3459297 acctcattcaaaggtaagacaattgttgtagttagaa 3459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 17366684 - 17366732
Alignment:
Q  86 aagacaattgttgtagttagaaggtgca-ttctctacctaatcacgatc 133  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||||||    
T  17366684 aagacaattgttatagttggaaggtgcatttccctacctaatcacgatc 17366732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 17292281 - 17292071
Alignment:
Q  8 atttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattcagaggtaagacaattgttgtagttagaa 107  Q
    |||||||||| |||||||| ||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||    
T  17292281 atttttgaaaagaacaatagaacttccgggtgaatgcttgagagctgttgtttaataggtttgacctt-ttcagaggtaaaacaattgttgtagttggaa 17292183  T
Q  108 ggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaa 207  Q
    ||||||||| |||| ||||||||||||| ||||  | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17292182 ggtgcattccctacataatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgataaacggaa 17292083  T
Q  208 ccatgatgtgct 219  Q
    ||||||||||||    
T  17292082 ccatgatgtgct 17292071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 13866587 - 13866365
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgttgtagtt 103  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||      ||||||||| ||||||||||||||||    
T  13866587 ttttgaaaggaacaataaaacttccgggtgaatgcttgagagctgttgtttaacaagtttgaccttatccaatttcagaggtatgacaattgttgtagtt 13866488  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
      ||||||||||| ||||||||||||| |||| ||||  | ||||| ||||||||||||||| |||||||||| ||||||| ||| ||||||| ||  ||    
T  13866487 gaaaggtgcattccctacctaatcacggtcttctggcggaatcaaactgttgagaatatcttcagttgatctcagcaacgttacatacatatcaatccac 13866388  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    || | |||| |||||| ||||||    
T  13866387 ggtaacatgttgtgctcccaaaa 13866365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 13851073 - 13850851
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||| ||||||| ||      ||||||||| |||||||||||||    
T  13851073 ttttgaaaggaacaataaaacttccgggtgaatgcttgagagatgttgtttaacaagtttaaccttatccaattttagaggtaagataattgttgtagtt 13850974  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| ||||||||||||| |||| ||||  | ||||| |||||||||||||||||||||||||| |||| || ||| ||||||||||  ||    
T  13850973 ggaaggtgcattccctacctaatcacggtcttctggcggaatcaaactgttgagaatatctttagttgatctcagcaatgttacatacatatcgatccac 13850874  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    || | |||| |||||| ||||||    
T  13850873 ggtaacatgttgtgctcccaaaa 13850851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 23124484 - 23124630
Alignment:
Q  80 agaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgc 179  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||| |||| || ||||| |||||||||||||||||   |||||| ||    
T  23124484 agaggtaagacaattgttgtagttgaaaggtgcattccctacctaatcacaatcttctggcgaaatcaaattgttgagaatatctttaagcgatctcagc 23124583  T
Q  180 aacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    ||||||||||||||||||||  |||  | |||| |||||||||||||    
T  23124584 aacgtgacaaacatatcgatccacgagaacatgttgtgctaccaaaa 23124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 31324497 - 31324303
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgac----cttatt-cagaggtaagacaattgttgtagtta 104  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||| ||||| || ||||||     || ||| || ||||||||||||||||||||||     
T  31324497 ttttgaaaggaacaatagaacttccgggtgaatgcttgagagctgtcgtttagcaagtttgaattatctcatttcaaaggtaagacaattgttgtagttg 31324398  T
Q  105 gaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    |||||||||||| ||||||||||| |||||| | ||  | ||||| |||||||||| |||| |||||||||| ||||| | ||| ||||||||||    
T  31324397 gaaggtgcattccctacctaatcatgatcttctagcggaatcaaactgttgagaatgtcttcagttgatctcagcaactttacacacatatcgat 31324303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 18412839 - 18412697
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacg 183  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| | ||||| |||||| ||||| || |||||||||| ||||||    
T  18412839 gtaagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcagaatcaaattgttgataatatattcagttgatctcagcaacg 18412740  T
Q  184 tgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    | |||  |||||||||  || ||| |||| |||||| ||||||    
T  18412739 ttacacgcatatcgatccactgaaacatggtgtgctcccaaaa 18412697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 49817159 - 49817275
Alignment:
Q  83 ggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||| | ||| | |||||| |||||||| | ||||||||  ||||    
T  49817159 ggtaagacaattattgtagttggaaggtgcattccctacctaatcacgatcttttggcagaatcagactgttgataatatcttcatttgatctcatcaac 49817258  T
Q  183 gtgacaaacatatcgat 199  Q
    || |||  |||||||||    
T  49817259 gttacacgcatatcgat 49817275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 17211511 - 17211410
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    |||||||||||||||||||| |||| |||||| | |||||||||||||||||| ||||  | ||| | |||||| ||||||||||||||||||| |||||    
T  17211511 gtaagacaattgttgtagttggaagatgcatttccctacctaatcacgatcttctggcggaatcagactgttgataatatctttagttgatctcagcaac 17211412  T
Q  183 gt 184  Q
    ||    
T  17211411 gt 17211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 3393549 - 3393433
Alignment:
Q  83 ggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    ||||| |||| |||||||||| |||||||||||| ||||||||||| |||||| ||||  | ||| | |||||| |||||||| |||||||||| |||||    
T  3393549 ggtaatacaaatgttgtagttggaaggtgcattccctacctaatcatgatcttctggcggaatcagactgttgataatatcttcagttgatctcagcaac 3393450  T
Q  183 gtgacaaacatatcgat 199  Q
    || |||  |||||||||    
T  3393449 gttacatgcatatcgat 3393433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 13854979 - 13855075
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgta 100  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||| ||||||  |||      ||||||||||||||||||||||||    
T  13854979 ttttgaaaggaacaataaaacttccgggtgaatacttgaaagctgttgtttaacaagtttgaatttatccaatttcagaggtaagacaattgttgta 13855075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 23620523 - 23620448
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat 77  Q
    |||||||||||| |||||| |||||||| |||  |||||||| ||||||| |||||||||||| ||||||||||||    
T  23620523 tacctaatttttaaaaggagcaataaaatttccgggtgaatgtttgagagttgttgtttaacaagtttgaccttat 23620448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 13866751 - 13866821
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca 80  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||| ||||||  |||||||    
T  13866751 ttttgaaaggaacaataaaacttccgggtgaatacttgagagccgttgtttaacaagtttgaatttattca 13866821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 10312517 - 10312465
Alignment:
Q  83 ggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatctt 135  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  10312517 ggtaagacaattgttgtagttggaaggtgaattccctacctaatcacgatctt 10312465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 11288536 - 11288397
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtg 185  Q
    ||||||||| | |||||| |||||||||||| |||| ||||||||||||| |  || | ||||| || ||| |||||||| |||||||||| |||||||     
T  11288536 aagacaattatggtagttggaaggtgcattccctacttaatcacgatcttctaacagaatcaaattg-tgataatatcttcagttgatctcagcaacgtt 11288438  T
Q  186 acaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    ||   |||||||||  || | | ||||||||||| ||||||    
T  11288437 actcgcatatcgatccactggaacatgatgtgctcccaaaa 11288397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 18413031 - 18413137
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| ||||||||||||||||  |||||||  ||||||| ||||||||| || ||||||  |||      ||||||||||||| |||||||||||||    
T  18413031 ttttgaatggaacaataaaacttccgggtgaatatttgagagttgttgtttagcaagtttgaatttacctaatttcagaggtaagataattgttgtagtt 18413130  T
Q  104 agaaggt 110  Q
     ||||||    
T  18413131 ggaaggt 18413137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 24606995 - 24606856
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctc-tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    |||||||||||||||||| ||| || ||||  | ||||||||||||||||| ||||  | ||| | | |||| |||||||| |||||||||| |||||||    
T  24606995 aagacaattgttgtagttggaatgtacatttacctacctaatcacgatcttctggcggaatcagactcttgataatatcttcagttgatctcagcaacgt 24606896  T
Q  185 gacaaacatatcgataaacggaaccatgatgtgctaccaa 224  Q
     ||  ||||||| ||  |||| | ||||||||||| ||||    
T  24606895 tacccacatatcaatccacgggaacatgatgtgctcccaa 24606856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 49423709 - 49423821
Alignment:
Q  76 attcagaggtaagacaattgttgtagttagaaggtgcattc--tc--tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttg 171  Q
    ||||| |||||| ||||||||||||| | ||||||||||||  ||  |||||||| |||||||||||||| | ||||| | ||||  || |||| |||||    
T  49423709 attcaaaggtaacacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttatggcagaatcaaacttttgatgatttcttcagttg 49423808  T
Q  172 atctctgcaacgt 184  Q
    ||||| |||||||    
T  49423809 atctcagcaacgt 49423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 957416 - 957518
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattc--tc--tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaa 181  Q
    |||||||||||||||| | ||||||||||||  ||  |||||||| |||||||| ||||  | ||||| | ||||  |||||||||||||||||| ||||    
T  957416 aagacaattgttgtagctggaaggtgcattcattccgtacctaatgacgatcttctggcggaatcaaacttttgatgatatctttagttgatctcagcaa 957515  T
Q  182 cgt 184  Q
    |||    
T  957516 cgt 957518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 9717842 - 9717878
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9717842 ttcagaggtaagacaattgttgtagtttgaaggtgca 9717878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 17211803 - 17211839
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17211803 ttcagaggtaagacaattgttgtagtttgaaggtgca 17211839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 20759159 - 20759213
Alignment:
Q  145 tcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    ||||| ||||||||||||||| ||  ||| || ||||||||||||||||||||||    
T  20759159 tcaaattgttgagaatatcttcaggcgatatcagcaacgtgacaaacatatcgat 20759213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 20765550 - 20765604
Alignment:
Q  145 tcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    ||||| ||||||||||||||| ||  ||| || ||||||||||||||||||||||    
T  20765550 tcaaattgttgagaatatcttcaggcgatatcagcaacgtgacaaacatatcgat 20765604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 31324663 - 31324721
Alignment:
Q  13 tgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    ||||||||||||| ||||||   ||||||||||||||||||||| |||| || ||||||    
T  31324663 tgaaaggaacaattaaactttcgggtgaatgcttgagagctgttatttagcaagtttga 31324721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 3393810 - 3393846
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    |||| |||||||||||||||||||||| |||||||||    
T  3393810 ttcaaaggtaagacaattgttgtagtttgaaggtgca 3393846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 21411592 - 21411556
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  21411592 ttcagaggtaagataattgttgtagttcgaaggtgca 21411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 21411853 - 21411889
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  21411853 ttcagaggtaagataattgttgtagttcgaaggtgca 21411889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 46816224 - 46816188
Alignment:
Q  71 accttattcagaggtaagacaattgttgtagttagaa 107  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  46816224 acctcattcaaaggtaagacaattgttgtagttagaa 46816188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 31991806 - 31992036
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattg 95  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| || ||||||||||||||      ||||||||||||||||||    
T  31991806 tacctaatttttgaaaggaacaataaaactttcgggtgaatgcttgagagctgttgttcaataggtttgaccttatccaatttcagaggtaagacaattg 31991905  T
Q  96 ttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||  | ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  31991906 ttgtagttggaaggtgcattccctacctaatcacgatcttctggcggaatcaaattgttgagaatatcttcagttgatctctgcaacgtgacaaacatat 31992005  T
Q  196 cgataaacggaaccatgatgtgctaccaaaa 226  Q
    ||||||||||||||||| | |||| ||||||    
T  31992006 cgataaacggaaccatgctatgcttccaaaa 31992036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 27650304 - 27650500
Alignment:
Q  9 tttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgttgtagt 102  Q
    ||||| |||||||||||| |||||   |||||||||||||||  ||||||| |||||||||||||||||      ||||||||||| |||||||||||||    
T  27650304 tttttaaaaggaacaatataactttcgggtgaatgcttgagatttgttgttcaacaggtttgaccttatccaacttcagaggtaagtcaattgttgtagt 27650403  T
Q  103 tagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    | |||||||||||| |||||||||||||||||| ||||  | ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27650404 tggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgagaatatcttcagttgatctcagcaacgtgacaaacatatcgat 27650500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 18036113 - 18036262
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||| ||||  | ||||| |||||||||||| |||||||||||||    
T  18036113 ttcagaggtaagacaattgttgtagttggaaggtgcatttcctacctaatcacgatcttctggcggaatcaaattgttgagaatatttttagttgatctc 18036212  T
Q  177 tgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| ||||||    
T  18036213 tgcaacgtgacaaacatattgataaacggagccatgttgtgctgccaaaa 18036262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 15891525 - 15891747
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||| || ||||||  |||| ||      || ||| ||||||||||||||||    
T  15891525 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaactgttatttagcaagtttgaatttatccaatttaagaagtatgacaattgttgtagtt 15891624  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| ||||||||||||||| || | ||  | ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| | |    
T  15891625 ggaaggtgcattccctacctaatcacgatattctagcggaatcaaactgttgagaatatcttcagttgatctccgcaacgtgacaaacatatcgatcacc 15891724  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    ||||||||| || ||| ||||||    
T  15891725 ggaaccatgctgcgctgccaaaa 15891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 33404261 - 33404163
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |  ||| | |||||| |||||||| |||||||||| |||||||    
T  33404261 aagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcgacatcagactgttgataatatcttcagttgatctcagcaacgt 33404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 16253703 - 16253603
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacg 183  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||   | ||||| ||| || ||||||||||||||||||| ||||||    
T  16253703 gtaagacaattgttgtagttggaaggtgtattccctacctaatcacgatcttctggtggaatcaaactgtcgataatatctttagttgatctcagcaacg 16253604  T
Q  184 t 184  Q
    |    
T  16253603 t 16253603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 15891371 - 15891275
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgta 100  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||| ||||||| |  |||      ||||||||||||||||||||||||    
T  15891371 ttttgataggaacaataaaacttccgggtgaatgcttgagagctgttgtttagcaggtttaaatttattcaatttcagaggtaagacaattgttgta 15891275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 11679084 - 11679179
Alignment:
Q  122 ctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtg 217  Q
    |||||||  ||||||||||| | ||||| ||||||||||||||| |||||||||  | ||||||| ||||||||||||  |||| | |||||||||    
T  11679084 ctaatcataatcttatggcagaatcaaactgttgagaatatcttcagttgatctaagtaacgtgagaaacatatcgatccacgggaacatgatgtg 11679179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 11718968 - 11718870
Alignment:
Q  119 tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtg 217  Q
    ||||||||||  ||||||  ||| | ||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||||  |||| | |||||||||    
T  11718968 tacctaatcataatcttacagcagaatcaaactgttgagaatatcttcagttgatctcagtaacgtgagaaacatatcgatccacgggaacatgatgtg 11718870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 20148384 - 20148334
Alignment:
Q  83 ggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatc 133  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  20148384 ggtaagacaattgttgtagttggaaggagcattccctacctaatcacgatc 20148334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 42241049 - 42241199
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatct 175  Q
    ||||||||||||||||||||||||||| ||| |  | || | ||| ||||| |||||||||||||| | ||||| | |||   ||||||| |||||||||    
T  42241049 ttcagaggtaagacaattgttgtagttggaatgcaccttaccctaactaatgacgatcttatggcagaatcaaacttttggtgatatcttcagttgatct 42241148  T
Q  176 ctgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    | ||||||| ||   ||||||||| ||| ||| |||| |||||| ||||||    
T  42241149 cagcaacgtcacccgcatatcgatcaactgaaacatgttgtgctcccaaaa 42241199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 6902228 - 6902182
Alignment:
Q  87 agacaattgttgtagttagaaggtgcattctctacctaatcacgatc 133  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  6902228 agacaattgttgtagttggaaggtgcattccctacctaatcatgatc 6902182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 16253897 - 16254002
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| ||||||||||||||||   ||||||||||||||||||  ||||| |||||||||  |||      ||||||  |||||||||||||||||||    
T  16253897 ttttgaatggaacaataaaacttccgagtgaatgcttgagagctgccgtttagcaggtttgaatttaccccatttcagatataagacaattgttgtagtt 16253996  T
Q  104 agaagg 109  Q
     |||||    
T  16253997 ggaagg 16254002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 16707867 - 16707974
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat----tcagaggtaagacaattgttgtagttag 105  Q
    ||||||| |||| |||||||||||  |||||||| |||||   || |||||||||  |||||  ||||    |||||||||||| ||||||||||||| |    
T  16707867 ttttgaatggaagaataaaacttccgggtgaatgtttgagtcatggtgtttaacaattttgaatttatcatttcagaggtaagataattgttgtagtttg 16707966  T
Q  106 aaggtgca 113  Q
    ||||||||    
T  16707967 aaggtgca 16707974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 18878691 - 18878641
Alignment:
Q  145 tcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    ||||| ||||||||||||||| ||  |||||| ||||||||||||||||||    
T  18878691 tcaaattgttgagaatatcttcaggcgatctcagcaacgtgacaaacatat 18878641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 33404527 - 33404567
Alignment:
Q  76 attcagaggtaagacaattgttgtagttagaaggtgcattc 116  Q
    ||||||||||||||||||||||||| || |||||| |||||    
T  33404527 attcagaggtaagacaattgttgtatttggaaggtacattc 33404567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 28051698 - 28051473
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattcagaggtaagacaattgttgtag 101  Q
    |||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  28051698 tacctaatttttgaaaggaacaataaaacttttgggtgaatgtttgagagctgttgtttaacaggtttgaccttattcagaggtaagaaaatggttgtag 28051599  T
Q  102 ttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgag-aatatctttagttgatctctgcaacgtgacaaacatatcgata 200  Q
    ||  |||||||||||||||| ||||||||||||| | ||  | ||||| | ||||| |||||||  |||||||||||||||||||||||||||||||||     
T  28051598 ttgaaaggtgcattctctacgtaatcacgatcttctagcggaatcaaactattgagaaatatctccagttgatctctgcaacgtgacaaacatatcgatc 28051499  T
Q  201 aacggaaccatgatgtgctaccaaaa 226  Q
    | | |||||||| |||||| ||||||    
T  28051498 accagaaccatgctgtgctgccaaaa 28051473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 17465289 - 17465438
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||  | ||||| ||||||||||||||| ||||||||||    
T  17465289 ttcagaggtaagacaattgttgtagttggaaggtgtattctctacctaatcacgatcttttggcggaatcaaactgttgagaatatcttcagttgatctc 17465388  T
Q  177 tgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    |||||||||||||||||||||||  ||| ||||||||| |||| ||||||    
T  17465389 tgcaacgtgacaaacatatcgatccacgaaaccatgatctgctgccaaaa 17465438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 20192646 - 20192424
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||||| || ||||||  |||| ||      |||||| ||||||||||||||||    
T  20192646 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 20192547  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| || |||||||||  |||| || || |  || | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  20192546 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcacc 20192447  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    | ||| |||||||||| ||||||    
T  20192446 gaaactatgatgtgctgccaaaa 20192424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 20242008 - 20242230
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||||| || ||||||  |||| ||      |||||| ||||||||||||||||    
T  20242008 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 20242107  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| || |||||||||  |||| || || |  || | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  20242108 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcacc 20242207  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    | ||| |||||||||| ||||||    
T  20242208 gaaactatgatgtgctgccaaaa 20242230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 22135992 - 22136214
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||||| || ||||||  |||| ||      |||||| ||||||||||||||||    
T  22135992 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 22136091  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| || |||||||||  |||| || || |  || | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  22136092 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcacc 22136191  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    | ||| |||||||||| ||||||    
T  22136192 gaaactatgatgtgctgccaaaa 22136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 22143345 - 22143567
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagtt 103  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||||| || ||||||  |||| ||      |||||| ||||||||||||||||    
T  22143345 ttttgaaaggaacaataaaacttccaggtgaatgcttgagaattgttgtttagcaagtttgaatttatccaatttaagaggtaggacaattgttgtagtt 22143444  T
Q  104 agaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaac 203  Q
     |||||||||||| || |||||||||  |||| || || |  || | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  22143445 ggaaggtgcattcccttcctaatcacattcttctgccagaaccacactgttgagaatatcttcagttgatctctgcaacgtgacaaacatatcgatcacc 22143544  T
Q  204 ggaaccatgatgtgctaccaaaa 226  Q
    | ||| |||||||||| ||||||    
T  22143545 gaaactatgatgtgctgccaaaa 22143567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 34134975 - 34134788
Alignment:
Q  13 tgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttattc------agaggtaagacaattgttgtagttaga 106  Q
    ||||||||||||||||||||   |||||||||||| || |||||||||| || ||||||  ||||||      ||||||||||||||||||||||||  |    
T  34134975 tgaaaggaacaataaaactttcgggtgaatgcttgggaactgttgtttagcaagtttgaa-ttattccatttcagaggtaagacaattgttgtagttgaa 34134877  T
Q  107 aggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    |||||||||| |||||||||||||||||| | ||  | ||||| |||||||||| |||| |||||||||||||||| ||||| ||||||    
T  34134876 aggtgcattccctacctaatcacgatcttttagcggaatcaaactgttgagaatttcttcagttgatctctgcaacatgacagacatat 34134788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 14482707 - 14482874
Alignment:
Q  13 tgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagttaga 106  Q
    |||||||||||||||||||||  |||||||| ||| ||| ||||||||| || ||||||  |||      |||||||| |||||||||||||||||  ||    
T  14482707 tgaaaggaacaataaaacttccgggtgaatgtttgggag-tgttgtttagcaagtttgaaattacccaaattcagaggcaagacaattgttgtagtggga 14482805  T
Q  107 aggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatct 175  Q
    |||||||||| |||||||||||  ||||| | ||  | ||||| |||||| ||||| | ||||||||||    
T  14482806 aggtgcattccctacctaatcattatcttctagcggaatcaaactgttgacaatatgtctagttgatct 14482874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 14115283 - 14115193
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | ||| | | ||||  ||||||| ||||||||||    
T  14115283 aagacaattgttgtagttggaaggtgcattccctacctaatcactatcttctggcagaatcagactcttgatgatatcttcagttgatctc 14115193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 20241845 - 20241794
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgttta 61  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  20241845 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgttta 20241794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 22135829 - 22135778
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgttta 61  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  22135829 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgttta 22135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 22143182 - 22143131
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgttta 61  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  22143182 ttttgaaaggaacaataaaacttctgggtgaatgcttgagagcagttgttta 22143131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 14482540 - 14482479
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    ||||||| |||||||||||||||   |||||||||||||||| ||||||||| || ||||||    
T  14482540 ttttgaatggaacaataaaactttcgggtgaatgcttgagagttgttgtttagcaagtttga 14482479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 14123439 - 14123479
Alignment:
Q  76 attcagaggtaagacaattgttgtagttagaaggtgcattc 116  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  14123439 attcagaggcaagacaattgttgtagttggaaggtgcattc 14123479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 4913735 - 4913681
Alignment:
Q  11 tttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacag 65  Q
    |||||||||||| |||||| |||  ||||||||||||||||||| ||||| ||||    
T  4913735 tttgaaaggaacgataaaatttctgggtgaatgcttgagagctgctgtttcacag 4913681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 2402381 - 2402333
Alignment:
Q  151 tgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    |||||||| |||||| ||  |||||| ||||||||||||||||||||||    
T  2402381 tgttgagattatcttcaggcgatctcagcaacgtgacaaacatatcgat 2402333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 3380554 - 3380777
Alignment:
Q  9 tttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgttgtagt 102  Q
    |||||||||||||||||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||      |||||||||||||||||||||| ||    
T  3380554 tttttgaaaggaacaataaaacttccgggtaaatgcttgagagttgttgtttaataggtttgaccttatccaatttcagaggtaagacaattgttgtcgt 3380653  T
Q  103 tagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaa 202  Q
    | |||||||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||||| ||||||||||| ||| |||| |||||||||||||||    
T  3380654 tggaaggtgcattccctacctaatcacgatcttctggcagaatcaaattgttgagaatatcttcagttgatctctacaatgtgataaacatatcgataaa 3380753  T
Q  203 cggaaccatgatgtgctaccaaaa 226  Q
    || ||||||| |||| | ||||||    
T  3380754 cgaaaccatgttgtgttgccaaaa 3380777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 150388 - 150192
Alignment:
Q  36 ggtgaatgcttgagagctgttgtttaacaggtttgaccttattca------gaggtaagacaattgttgtagttagaaggtgcattctctacctaatcac 129  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||      |||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  150388 ggtgaatgcatgagagttgttgtttaacaggtttgaccttatccaattttagaggtaagccaattgttgtagttggaaggtgcattccctacctaatcac 150289  T
Q  130 gatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    |||||| | ||| | ||||| ||||||||||||||| ||  ||||||  |||||||||||| ||||||||  |||| | ||||||||||| ||||||    
T  150288 gatcttctagcagaatcaaattgttgagaatatcttcaggcgatctcaacaacgtgacaaatatatcgatccacgggaacatgatgtgctgccaaaa 150192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 1642546 - 1642663
Alignment:
Q  82 aggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaa 181  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  | ||||| |||||| |||||||| ||||||||||  |||    
T  1642546 aggtaagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgataatatcttcagttgatctcaacaa 1642645  T
Q  182 cgtgacaaacatatcgat 199  Q
    ||| |||  |||||||||    
T  1642646 cgttacacgcatatcgat 1642663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 18149828 - 18149658
Alignment:
Q  36 ggtgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgtt-gtagttagaaggtgcattctctacctaatca 128  Q
    |||||||||||||||| |||||||||||||| ||||||||||      ||| |||||||||| || || ||||||  || |||||||| ||||||||  |    
T  18149828 ggtgaatgcttgagagttgttgtttaacagggttgaccttatccaatttcaaaggtaagacatttttttgtagttgaaaagtgcattccctacctaaata 18149729  T
Q  129 cgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    ||||||| ||||  | ||||| ||||||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  18149728 cgatcttctggcgcaatcaaactgttgagaatatcttcagttgatctctgcaacttgaaaaacaaatcgat 18149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 11824912 - 11824797
Alignment:
Q  111 gcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaacca 210  Q
    |||||| |||||||||||||||||| | ||  | ||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||  |||||    
T  11824912 gcattccctacctaatcacgatcttctagcggaatcaaactgttgaaaatatcttcagttgatctctgcaacgtgacatacatatcgataaacataacca 11824813  T
Q  211 tgatgtgctaccaaaa 226  Q
    || |||| | ||||||    
T  11824812 tgttgtgttgccaaaa 11824797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 11824983 - 11824914
Alignment:
Q  2 tacctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    |||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  11824983 tacctaatttttaaaaggaacaataaaactttcgggtgaatgcttgagagctgttgtttaacaggtttga 11824914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 5282334 - 5282451
Alignment:
Q  5 ctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttg 98  Q
    |||||||||||||||||||||| |||||   ||||||||| |||||| ||||||||||||||||| ||||||      || ||||| | |||||||||||    
T  5282334 ctaatttttgaaaggaacaatagaactttcgggtgaatgcatgagagttgttgtttaacaggtttaaccttatcaaattttagagggaggacaattgttg 5282433  T
Q  99 tagttagaaggtgcattc 116  Q
    |||||  |||||||||||    
T  5282434 tagttgaaaggtgcattc 5282451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 21614549 - 21614442
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttg-----accttattcagaggtaagacaattgttgtagtta 104  Q
    ||||||| | |||||||||||||| || ||||||||||| ||||||||||| ||| |||||     |||| ||||| |||||||| |||||||||||||     
T  21614549 ttttgaatgaaacaataaaacttccagatgaatgcttgatagctgttgtttgacaagtttgaatttacctcattcaaaggtaagataattgttgtagttg 21614450  T
Q  105 gaaggtgc 112  Q
    ||||||||    
T  21614449 gaaggtgc 21614442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 2356543 - 2356443
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca-ttctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatct 175  Q
    ||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||| |||||| ||  | ||||| | ||||  ||||||| |||||||||    
T  2356543 ttcagaggtaagacaattgttgtagttggaagatgcatttccctacctaatcacggtcttatagcggaatcaaatttttgatgatatcttcagttgatct 2356444  T
Q  176 c 176  Q
    |    
T  2356443 c 2356443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 21614722 - 21614821
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    ||||||||||||||||||  |||||||||| | |||||||||||||| ||| ||||  | ||||||| ||||  ||||||| |||||||||| |||||||    
T  21614722 aagacaattgttgtagttgaaaggtgcatttccctacctaatcacgaacttctggcggaatcaaaattttgatgatatcttcagttgatctcagcaacgt 21614821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 28066466 - 28066386
Alignment:
Q  119 tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    |||||||||||||| || ||||  | ||||| | ||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  28066466 tacctaatcacgatgttctggcggaatcaaacttttgagaatatcttcagacgatctcagcaacgtgacaaacatatcgat 28066386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 1642356 - 1642247
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctta------ttcagaggtaagacaattgttgtagtt 103  Q
    ||||||| | || |||||||||||  ||||||||||||||||||| |||||| |  ||||||  |||      |||| ||||||||||||||||||||||    
T  1642356 ttttgaatgaaataataaaacttccgggtgaatgcttgagagctgctgtttagccagtttgaatttaccccatttcataggtaagacaattgttgtagtt 1642257  T
Q  104 agaaggtgca 113  Q
     |||||||||    
T  1642256 tgaaggtgca 1642247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 7414196 - 7414273
Alignment:
Q  118 ctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    |||||||||||  ||||| |||| || ||||| |||||||||||| || ||  |||||| ||||||||||||||||||    
T  7414196 ctacctaatcataatcttctggcgaaatcaaactgttgagaatattttcaggcgatctcagcaacgtgacaaacatat 7414273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 15337603 - 15337564
Alignment:
Q  71 accttattcagaggtaagacaattgttgtagttagaaggt 110  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  15337603 acctcattcagaggtaagacaattgttgtagttggaaggt 15337564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 31171697 - 31171891
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgac----cttatt-cagaggtaagacaattgttgtagtta 104  Q
    ||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||| ||||||     || ||| |||||||||||||||||||||||||     
T  31171697 ttttgaaaggaacaatagaacttccgggtgaatgcttgagaactgttgtttaacaagtttgaattatctcatttcagaggtaagacaattgttgtagttg 31171796  T
Q  105 gaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgat 199  Q
    ||||||||||||  ||||||||||||||||| ||||  | ||||| |||||| ||||| || |||||||||| ||||||| ||  ||||||||||    
T  31171797 gaaggtgcattccatacctaatcacgatcttctggcggaatcaaactgttgataatattttcagttgatctcagcaacgtcacccacatatcgat 31171891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 3589145 - 3589318
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgac----cttattc---agaggtaagacaattgttgtagt 102  Q
    ||||||||||||||| | || |||  ||||||||||||||| |||||||||| || ||||||     || |||    |||||||||||||||||||||||    
T  3589145 ttttgaaaggaacaacagaatttccgggtgaatgcttgagaactgttgtttagcaagtttgaattatctcatttcagagaggtaagacaattgttgtagt 3589244  T
Q  103 tagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    | |||||||||||| |||||||||||||||||| ||||  | ||||| |||||| ||| |||| ||||||||||    
T  3589245 ttgaaggtgcattccctacctaatcacgatcttctggcggaatcaaactgttgataatgtcttcagttgatctc 3589318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 2923811 - 2923888
Alignment:
Q  38 tgaatgcttgagagctgttgtttaacaggtttgaccttat------tcagaggtaagacaattgttgtagttagaagg 109  Q
    |||| |||||||||||  ||||||||||||| ||||||||      |||||||||||||||||||||||||| |||||    
T  2923811 tgaaagcttgagagcttctgtttaacaggttcgaccttatccgacttcagaggtaagacaattgttgtagttcgaagg 2923888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3009630 - 3009560
Alignment:
Q  5 ctaatttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttgacctt 75  Q
    |||||||| ||||| ||||| | ||||||  ||||||| || || || |||||||||||||||||||||||    
T  3009630 ctaattttcgaaagaaacaacagaacttccgggtgaatactagatagttgttgtttaacaggtttgacctt 3009560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 14772490 - 14772622
Alignment:
Q  80 agaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgc 179  Q
    |||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| ||||| | ||||| ||||||||| ||||| | |||||||||||    
T  14772490 agaggtaacacaattcttgtagttggaaggtgcattccctacctaatcacgatcttctggcagaatcaaactgttgagaacatcttcaattgatctctgc 14772589  T
Q  180 aacgtgacaaacatatcgataaacggaaccatg 212  Q
    ||| |||||||||||| ||||| || |||||||    
T  14772590 aacatgacaaacatattgataaccgaaaccatg 14772622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 13283947 - 13283849
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  | ||| | |||||| ||||| || |||||||||| |||||||    
T  13283947 aagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggcggaatcagactgttgataatatattcagttgatctcagcaacgt 13283849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 5765449 - 5765350
Alignment:
Q  85 taagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  | ||| |  ||||| |||||||| | |||||||| |||||||    
T  5765449 taagacaattgttgtagttggaaggtgcattccctacctaatcacgatcttctggcggaatcagacggttgataatatcttcatttgatctcagcaacgt 5765350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 16532051 - 16532152
Alignment:
Q  83 ggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    ||||||||||||||||||||| |||| |||||||  ||||||||||||||||| | || || ||| | | |||| |||||||| |||||||||| |||||    
T  16532051 ggtaagacaattgttgtagttggaagatgcattccatacctaatcacgatcttctagcgaaatcagactattgataatatcttcagttgatctcagcaac 16532150  T
Q  183 gt 184  Q
    ||    
T  16532151 gt 16532152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 17697288 - 17697190
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||||||| ||||  | ||| | | |||| |||||||| |||||||||| |||||||    
T  17697288 aagacaactgttgtagttggaaggtgcattccttacctaatcacgatcttctggcggaatcagactcttgataatatcttcagttgatctcagcaacgt 17697190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 19262436 - 19262517
Alignment:
Q  145 tcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||   ||| | ||||||||||| ||||||    
T  19262436 tcaaactgttgagaatatcttcagttgatctcagcaacgtgacaaacatattgatcctcgggaacatgatgtgctgccaaaa 19262517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 24363764 - 24363813
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattctctacctaatcacgatctt 135  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  24363764 aagacaattgttgtagttggaaggtgcattccctacctaatcacgatctt 24363813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 16081529 - 16081478
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatctt 135  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  16081529 gtaagacaattgttgtagctggaaggtgcattccctacctaatcacgatctt 16081478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 14772352 - 14772291
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    ||||||||||||||||| ||||||   |||||||| |||||||||||||||| |||||||||    
T  14772352 ttttgaaaggaacaatagaacttccgtgtgaatgcatgagagctgttgtttagcaggtttga 14772291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 31451860 - 31451799
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgtttaacaggtttga 71  Q
    ||||||||||||||||| ||||||  |||||||||||||||| |||| ||||  ||||||||    
T  31451860 ttttgaaaggaacaatagaacttcggggtgaatgcttgagagttgttatttagtaggtttga 31451799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 16081724 - 16081774
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttgagagctgttgttt 60  Q
    ||||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  16081724 ttttgaatggaacaataacacttccgggtgaatgcttgagagttgttgttt 16081774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 17686057 - 17686015
Alignment:
Q  71 accttattcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    |||| |||||||||||| ||||||||||||||| |||||||||    
T  17686057 acctcattcagaggtaacacaattgttgtagttggaaggtgca 17686015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 50068213 - 50068363
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatct 175  Q
    ||||||| ||||||||||||||||||| ||| |  | || ||||| ||||| |||||||| ||||  | ||||  ||||||  ||||||| |||||||||    
T  50068213 ttcagagctaagacaattgttgtagttggaatgcaccttactctaactaatgacgatcttctggcggaatcaagctgttgacgatatcttcagttgatct 50068312  T
Q  176 ctgcaacgtgacaaacatatcgataaacggaaccatgatgtgctaccaaaa 226  Q
    | ||||||| ||   |||||||||  || | | ||||||||||| ||||||    
T  50068313 cagcaacgttacccgcatatcgatccactggaacatgatgtgctcccaaaa 50068363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 17685810 - 17685770
Alignment:
Q  76 attcagaggtaagacaattgttgtagttagaaggtgcattc 116  Q
    |||||||||||||| ||||||||||||| |||||| |||||    
T  17685810 attcagaggtaagataattgttgtagttggaaggtacattc 17685770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 18842699 - 18842651
Alignment:
Q  86 aagacaattgttgtagttagaaggtgca-ttctctacctaatcacgatc 133  Q
    ||||||||| |||||||| ||||||||| ||| ||||||||||||||||    
T  18842699 aagacaattattgtagttggaaggtgcatttcactacctaatcacgatc 18842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 27034826 - 27034786
Alignment:
Q  76 attcagaggtaagacaattgttgtagttagaaggtgcattc 116  Q
    |||||| || |||||||||||||||||| ||||||||||||    
T  27034826 attcaggggcaagacaattgttgtagttggaaggtgcattc 27034786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 18441003 - 18440888
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacg 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||   | ||||| |||||| |||||||| |||||||||| ||||||    
T  18441003 gtaagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggtggaatcaaactgttgataatatcttcagttgatctcagcaacg 18440904  T
Q  184 tgacaaacatatcgat 199  Q
    | ||| ||||||||||    
T  18440903 ttacacacatatcgat 18440888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 19486077 - 19485962
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacg 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||   | ||||| |||||| |||||||| |||||||||| ||||||    
T  19486077 gtaagacaattgttgtagttggaaggtgcattctctacctaatcacgatcttctggtggaatcaaactgttgataatatcttcagttgatctcagcaacg 19485978  T
Q  184 tgacaaacatatcgat 199  Q
    | ||| ||||||||||    
T  19485977 ttacacacatatcgat 19485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 774292 - 774399
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||   | ||| | | ||||  ||||||| ||||||||||    
T  774292 ttcagaggtaagacaattgttgcagttggaaggtgcattccctacctaatcacgatcttctggtggaatcagactcttgatgatatcttcagttgatctc 774391  T
Q  177 tgcaacgt 184  Q
     |||||||    
T  774392 agcaacgt 774399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 15637249 - 15637157
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctc 176  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||   ||||| ||||||| |||| |||||||| ||||||||||    
T  15637249 gtaagacaattgttgtagttggaaggtgaattccctaccgaattacgatcttccagcaaaatcaaaatattgataatatcttcagttgatctc 15637157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 14265666 - 14265548
Alignment:
Q  81 gaggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgca 180  Q
    ||||||||||||||| ||||||| ||| ||||| || ||||||||||||||||||  |||  | ||||| | | |||||||||||||||| ||||| | |    
T  14265666 gaggtaagacaattgatgtagttggaaagtgcaatccctacctaatcacgatcttcaggcggaatcaaactctggagaatatctttagttaatctcagta 14265567  T
Q  181 acgtgacaaacatatcgat 199  Q
    |||| ||| ||| ||||||    
T  14265566 acgttacacacaaatcgat 14265548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 6754463 - 6754362
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    |||||||| ||||||||||| ||||||||||| | |||| ||||||||||||| | ||| | ||| | |||||| |||||||| |||||||||| |||||    
T  6754463 gtaagacagttgttgtagttggaaggtgcatttccctacataatcacgatcttctagcagaatcagactgttgataatatcttcagttgatctcagcaac 6754364  T
Q  183 gt 184  Q
    ||    
T  6754363 gt 6754362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 25887562 - 25887664
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcattctctacctaat---cacgatcttatggcaaagtcaaaatgttgagaatatctttagttgat 173  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||   |||||| || | ||  | ||||| ||| ||||||||||| |||||||    
T  25887562 ttcataggtaagacaattgttgtagttggaaggtgcattccctacctaataatcacgatattctagcggaatcaaactgtggagaatatcttcagttgat 25887661  T
Q  174 ctc 176  Q
    |||    
T  25887662 ctc 25887664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 20375843 - 20375958
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacg 183  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||| || ||||  | |||||  ||||  | |||||| | |||||||| ||||||    
T  20375843 gtaagacaatttttgtagttggaaggtgcattccctacctaatcacgatattttggcggaatcaaacagttgttattatcttaaattgatctcagcaacg 20375942  T
Q  184 tgacaaacatatcgat 199  Q
    | |||  |||||||||    
T  20375943 ttacacgcatatcgat 20375958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 6464305 - 6464421
Alignment:
Q  84 gtaagacaattgttgtagttagaaggtgcatt-ctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaac 182  Q
    |||||| | ||||||||||| ||||||||||| | |||  ||||||||||||| | ||| | ||| | |||||| |||||||| |||||||||| |||||    
T  6464305 gtaagagagttgttgtagttggaaggtgcatttccctatataatcacgatcttcttgcagaatcagactgttgataatatcttcagttgatctcagcaac 6464404  T
Q  183 gtgacaaacatatcgat 199  Q
    || ||  ||||||||||    
T  6464405 gttacccacatatcgat 6464421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 27187178 - 27187106
Alignment:
Q  112 cattctctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgt 184  Q
    ||||| ||||||||||||||| |||||||  | ||| | |||||| ||||||||||||||||||| |||||||    
T  27187178 cattccctacctaatcacgatattatggcggaatcagattgttgataatatctttagttgatctcagcaacgt 27187106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 7954916 - 7954865
Alignment:
Q  82 aggtaagacaattgttgtagttagaaggtgcattctctacctaatcacgatc 133  Q
    |||||| ||||||||||||||| |||||||||||| |||||| |||||||||    
T  7954916 aggtaatacaattgttgtagttggaaggtgcattccctacctgatcacgatc 7954865  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 33449117 - 33449168
Alignment:
Q  89 acaattgttgtagttagaaggtgcattctctacctaatcacgatcttatggc 140  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||| ||||    
T  33449117 acaattgttgtagttggaaggtgcattccctacctaattacgatcttctggc 33449168  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 774035 - 773986
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgcattctctacctaat 126  Q
    ||||||||||||| ||||||||||||| ||||||||||||  ||||||||    
T  774035 ttcagaggtaagaaaattgttgtagtttgaaggtgcattccgtacctaat 773986  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 27187834 - 27187879
Alignment:
Q  71 accttattcagaggtaagacaattgttgtagttagaaggtgcattc 116  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||    
T  27187834 acctcattcagaggtaagacaattgttgtagttggaaggtacattc 27187879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 6464038 - 6464002
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6464038 ttcagaggtaagacaattgttgtagtttgaaggtgca 6464002  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 7954464 - 7954371
Alignment:
Q  86 aagacaattgttgtagttagaaggtgcattc--tc--tacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatct 175  Q
    |||||||||||||||||||||||||||||||  ||  |||||||| |||||||| | ||  | ||| | |||||| |||||||| |||||||||    
T  7954464 aagacaattgttgtagttagaaggtgcattcattccgtacctaatgacgatcttctagcggaatcagattgttgataatatcttcagttgatct 7954371  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 25887491 - 25887528
Alignment:
Q  10 ttttgaaaggaacaataaaacttcaaggtgaatgcttg 47  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  25887491 ttttgaaaggaacaataaaacttccgggtgaatgcttg 25887528  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 6754734 - 6754766
Alignment:
Q  81 gaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||| |||||||||    
T  6754734 gaggtaagacaattgttgtagtttgaaggtgca 6754766  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 8632734 - 8632698
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  8632734 ttcagaggtaagataattgttgtagtttgaaggtgca 8632698  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 5561 - 5484
Alignment:
Q  118 ctacctaatcacgatcttatggcaaagtcaaaatgttgagaatatctttagttgatctctgcaacgtgacaaacatat 195  Q
    |||||||||| ||||||| |||| || ||||| ||||||||||||||| ||  ||||||  |||||||||||||||||    
T  5561 ctacctaatctcgatcttctggcgaaatcaaactgttgagaatatcttcaggcgatctcaacaacgtgacaaacatat 5484  T

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Target: scaffold0859 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 1173 - 1209
Alignment:
Q  77 ttcagaggtaagacaattgttgtagttagaaggtgca 113  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1173 ttcagaggtaagacaattgttgtagtttgaaggtgca 1209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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