View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_32 (Length: 223)
Name: NF16023_low_32
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2628455 - 2628244
Alignment:
| Q |
1 |
ttatgaaatttttatcggtgttgatatatttatgtcaatgtcgtgtttgtacttgtgcttcgta---tttatcctatcttactttgccttgacattagtt |
97 |
Q |
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| T |
2628455 |
ttatgaaatttttatgaatgtcgatatatctatgtcagtgtcgtgtttgtatctgtgcttcatacaatttatcctatcttactttgccttggcattagtt |
2628356 |
T |
|
| Q |
98 |
tattcattaataatataaggtctaatgatcatttaaccaatctaactaatgtaagcatttggtttccgaatgatttaagggtaaaatataaacatttttt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2628355 |
tattcattaataatataaggtctaatgatcatttaaccaatctaactaatgtaagcatttggtttccaaatgatttaagggtaaaatataaacatttttt |
2628256 |
T |
|
| Q |
198 |
agggttgttttt |
209 |
Q |
| |
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|||||||||||| |
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| T |
2628255 |
agggttgttttt |
2628244 |
T |
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