View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16023_low_6 (Length: 460)
Name: NF16023_low_6
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_6 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 13849772 - 13850215
Alignment:
| Q |
17 |
tagtttggcttgttcttgcagttggtcctgtgaagagagtcatgaagaaacagttaacagaatgcacttgatttatgtagtatcaaatgaatgaatgttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13849772 |
tagtttggcttgttcttgcagttggtcctgtgaagagagtcatgaagaaacaattaacagaatgcacttgatttatgtagtatcaaatgaatgaatgttc |
13849871 |
T |
|
| Q |
117 |
aaatatatctaactttctgatttctacactatctgatataggacagaataaactatactcatgaactcaacttttctaaagagaaagacaagagttaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13849872 |
aaatatatctaactttctgatttctacactatctgatataggacagaataaactatactcatgaactcatcttttctaaagagaaagacaagagttaaga |
13849971 |
T |
|
| Q |
217 |
taaaatgaaagcaaattacttcttttttagctatatattttcatataatgtgcttattgtactacattttgcattttcaagatatggttttcgaaaattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13849972 |
taaaatgaaagcaaattacttcttttttagctatatattttcatataatgtgcttattgtactacattttgcattttcaagatatggttttcgaaaattt |
13850071 |
T |
|
| Q |
317 |
caaatcagtcaagtgaccaactctaataaacttgcattccattgttcatattttagtgatgaaatgggaaagtacaaaaatacatgttctatgctgttcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13850072 |
caaatcagtcaagtgaccaactctaataaacttgcattccattgttcatattttagtgatgaaatgggaaagtacaaaaataaatgttctatgctgttcc |
13850171 |
T |
|
| Q |
417 |
gcccaaatcaatgcaaaagaaaagggagaggattggatggaatg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13850172 |
gcccaaatcaatgcaaaagaaaagggagaggattggatggaatg |
13850215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 13869025 - 13869095
Alignment:
| Q |
17 |
tagtttggcttgttcttgcagttggtcctgtgaagagagtcatgaagaaacagttaacagaatgcacttga |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
13869025 |
tagtttggcttgttcttgcagttggtcctgtgaagagaatcatgaagaaacaattaacagaatgcacttga |
13869095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 13896939 - 13896979
Alignment:
| Q |
18 |
agtttggcttgttcttgcagttggtcctgtgaagagagtca |
58 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13896939 |
agtttagcttgttcttgcagttgctcctgtgaagagagtca |
13896979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University