View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_7 (Length: 419)
Name: NF16023_low_7
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 9232111 - 9231713
Alignment:
| Q |
11 |
tttccccgagaacagagttaatgatggaccgttttcgttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaagga |
110 |
Q |
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| T |
9232111 |
tttcccggagaacatggttaatgatggaccgtttttgttgcaatctaattcgtaccttgtgtctccgcagtgatttggatcggttttgagacgaaatgga |
9232012 |
T |
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| Q |
111 |
tatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaata |
210 |
Q |
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| T |
9232011 |
tatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgatgcttagctagacaattttgatggaataggataaaaattgaagcaaata |
9231912 |
T |
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| Q |
211 |
tttttaccaatgtttgtagttgtacaaatgatgaacaagaaaatcgagcttgtcttttcatcattcaagtcttcnnnnnnntatgaaattttttaaaaca |
310 |
Q |
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| T |
9231911 |
tttttaccaatgtttgtagttgtacaaatgatgaacaagaaaattgagcttgtcttttcatcattcaagtcttcaaaaaaatatgaaattttttaaaaca |
9231812 |
T |
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| Q |
311 |
agccctcatgagaaaatgttgtgattggtttatgtttttaaattttataaatgggtcaatcatttatcattaggttgccaccatatctagctgcctttg |
409 |
Q |
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| T |
9231811 |
agccctcatgagaaaatgttgtgattggtttatgttttttaattttataaatgggtcaatcatttatcattaggttgccaccatatctagctgtctttg |
9231713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 9386534 - 9386733
Alignment:
| Q |
11 |
tttccccgagaacagagttaatgatggaccgttttcgttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaagga |
110 |
Q |
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| T |
9386534 |
tttcccggagaacatggttaatgatggaccattttcgttgcaatctaattcataccttttgtccccacagtggtttggatcagttttgagacgaaatggg |
9386633 |
T |
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| Q |
111 |
tatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaata |
210 |
Q |
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| T |
9386634 |
tatgttatgttggtgattttgccgcatgatgacgttgggcatggttggtgatgcttagcaagacaattttgatgagaaatgagaagaattgaagcaaata |
9386733 |
T |
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