View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16023_low_9 (Length: 401)
Name: NF16023_low_9
Description: NF16023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16023_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 32652847 - 32653223
Alignment:
| Q |
17 |
aattatgccgtaccaacttgatgaatcaacaggtgtttgtattttcattaaaattgtttttagatatattggcttatttgtggaataacatacttgcttt |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32652847 |
aattatgccgtaccgacttgatgaatcaacaggtgtttgtattttcattaaaattgtttttagatatattggcttatttgtggaataacatacttgcttt |
32652946 |
T |
|
| Q |
117 |
tgaattacaacagatcttattgggctggagaaaactgctgctgaattccgaccaaagctcattgctgttagtgtgtatcctccagacgtcgattattctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
32652947 |
tgaattacaacagatcttattgggctggagaaaactgctgctgaattccgaccaaagctcattgttgctagtgtgtatcctccagacgtcaattattctc |
32653046 |
T |
|
| Q |
217 |
gcattagaaaagtatgtttattttaatcttcatcatctgcttctatatacaatgtgattttattccttgcgataaactaattgcatcttttatgcaagga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32653047 |
gcattagaaaagtatgtttattttaatcttcatcatctgcttctgtatacaatgtgattttattccttgcgataaactaattgcatcttttatgcaagga |
32653146 |
T |
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| Q |
317 |
aagatagcagatgaagtaggtgcnnnnnnnatgatggatatgactcatattcttgggtttgttgccgagtctgtgct |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32653147 |
aagatagcagatgaagtaggtgctttttttatgatggatatgactcatattcttgggtttgttgccgagtctgtgct |
32653223 |
T |
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