View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16024_high_2 (Length: 384)
Name: NF16024_high_2
Description: NF16024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16024_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 27296064 - 27295697
Alignment:
| Q |
7 |
catcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296064 |
catcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaa |
27295965 |
T |
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| Q |
107 |
acatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatcttctctcaaagcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295964 |
acatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatcttctctcaaagcc |
27295865 |
T |
|
| Q |
207 |
aaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaacaaattaaataaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295864 |
aaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaacaaattaaataaaa |
27295765 |
T |
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| Q |
307 |
aattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295764 |
aattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
27295697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 14738620 - 14738722
Alignment:
| Q |
18 |
taggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacatggcaggt |
117 |
Q |
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| T |
14738620 |
taggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacatacacgactcaatgaatggtgttagaatcaaaacatggcaggt |
14738719 |
T |
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| Q |
118 |
aaa |
120 |
Q |
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||| |
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| T |
14738720 |
aaa |
14738722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 14739019 - 14739074
Alignment:
| Q |
312 |
tgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttca |
367 |
Q |
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||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
14739019 |
tgcagggtggatctggttcagtacagggagtattattctcaaacatacaagtttca |
14739074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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