View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16024_high_5 (Length: 232)

Name: NF16024_high_5
Description: NF16024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16024_high_5
NF16024_high_5
[»] scaffold0651 (1 HSPs)
scaffold0651 (21-232)||(3681-3892)
[»] chr4 (2 HSPs)
chr4 (21-232)||(31319778-31319989)
chr4 (21-232)||(31332031-31332242)


Alignment Details
Target: scaffold0651 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 3892 - 3681
Alignment:
Q  21 catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3892 catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 3793  T
Q  121 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3792 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg 3693  T
Q  221 ttcccaaagatt 232  Q
    ||||||||||||    
T  3692 ttcccaaagatt 3681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 31319778 - 31319989
Alignment:
Q  21 catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31319778 catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 31319877  T
Q  121 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31319878 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg 31319977  T
Q  221 ttcccaaagatt 232  Q
    ||||||||||||    
T  31319978 ttcccaaagatt 31319989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 31332031 - 31332242
Alignment:
Q  21 catgcatgaacatgacacaactcttcatcaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31332031 catgcatgaacatgacacaactcttcaacaatctctatctaacaaaggcctcaatgttacacttgactccaaaaacaacatcctcaaaatcaaatgtgat 31332130  T
Q  121 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaatctggctacaaagtggttgttctcgagaaaggaaactattttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31332131 gcagtagttgttggttctggctgtggaggaggtgtagcagcttctgtcctatcaaaagctggctacaaagtggttgttctcgagaaaggaaactattttg 31332230  T
Q  221 ttcccaaagatt 232  Q
    ||||||||||||    
T  31332231 ttcccaaagatt 31332242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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