View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16024_low_10 (Length: 235)
Name: NF16024_low_10
Description: NF16024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16024_low_10 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8189297 - 8189513
Alignment:
| Q |
1 |
gtaaattaggggatttccatcagattacttgtaaaataagttaacaagtgtcctaaatatataggtgaaaacaagtaaatttaaattaacagttatcaac |
100 |
Q |
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| T |
8189297 |
gtaaattaggggatttccatcagattacttgtaaaataagttaataagtgtcctaaatatataggtgaaaacaagtaaat-----ttaacagttatcaac |
8189391 |
T |
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| Q |
101 |
tcttctcaaaa--tccccaacttcacaaagcttgccactctcacgtcgaagccaaactttaattccgtgagctcatta-aagttacacatggtcgtctat |
197 |
Q |
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| T |
8189392 |
tcttctcaaaatctccccaacttcacaaagcttgccactctcacgtcgaagccaaactttaattccgtgagctcattacaagttacacatggtcgtctat |
8189491 |
T |
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| Q |
198 |
catggttgtctagcttcatttt |
219 |
Q |
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|||||| ||||||||||||||| |
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| T |
8189492 |
catggtcgtctagcttcatttt |
8189513 |
T |
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Target: scaffold0105 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 16001 - 16088
Alignment:
| Q |
133 |
ccactctcacgtcgaagccaaactttaattccgtgagctcatta-aagttacacatggtcgtctatcatggttgtctagcttcatttt |
219 |
Q |
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| T |
16001 |
ccactctcacgtggaagccaaactttaattccgtgagctcattacaagttacacatggtcgtctatcatggtcgtctagcttcatttt |
16088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 32126638 - 32126601
Alignment:
| Q |
33 |
aaaataagttaacaagtgtcctaaatatataggtgaaa |
70 |
Q |
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| T |
32126638 |
aaaacaagctaacaagtgtcctaaatatataggtgaaa |
32126601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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