View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16024_low_6 (Length: 319)

Name: NF16024_low_6
Description: NF16024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16024_low_6
NF16024_low_6
[»] chr8 (2 HSPs)
chr8 (18-309)||(10491664-10491955)
chr8 (43-75)||(10491962-10491994)
[»] chr6 (3 HSPs)
chr6 (130-167)||(29235700-29235737)
chr6 (118-162)||(4005137-4005181)
chr6 (118-174)||(18262787-18262843)
[»] chr3 (4 HSPs)
chr3 (116-173)||(19730627-19730684)
chr3 (118-174)||(20882001-20882057)
chr3 (122-176)||(36895359-36895413)
chr3 (116-173)||(19751239-19751296)
[»] chr2 (1 HSPs)
chr2 (121-168)||(28148332-28148379)
[»] chr1 (1 HSPs)
chr1 (132-178)||(3523387-3523433)
[»] chr4 (1 HSPs)
chr4 (122-166)||(7422170-7422214)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 10491955 - 10491664
Alignment:
Q  18 attaacagcatgctagctagtcattaattagcagaagttaattgtctaatactatatgagtacccaaatatctgatgtgtgttgatgtctgatacttcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  10491955 attaacagcatgctagctagtcattaattagcagaagttaattgtctaatactatatgagtacccaaatgtctgatgtgtgttgatgtctgatacttgat 10491856  T
Q  118 actgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgtttacgagtccatatttgtgtcactgctttgtagattttaaatgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10491855 actgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgtttacgagtccatatttgtgtcactgctttgtagattttaaatgt 10491756  T
Q  218 ttgaattgttcttcctttatgttgattttttattgtttgctttgtggttatctttctcgtttgatagctgatgactgtttacatgccctttg 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10491755 ttgaattgttcttcctttatgctgattttttattgtttgctttgtggttatctttctcgtttgatagctgatgactgtttacatgccttttg 10491664  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 10491994 - 10491962
Alignment:
Q  43 aattagcagaagttaattgtctaatactatatg 75  Q
    |||||||||||||||||||||||||||||||||    
T  10491994 aattagcagaagttaattgtctaatactatatg 10491962  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 29235737 - 29235700
Alignment:
Q  130 aattacatacaatcacttctatcttatcaaattattat 167  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29235737 aattacattcaatcacttctatcttatcaaattattat 29235700  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 4005181 - 4005137
Alignment:
Q  118 actgacacatgtaattacatacaatcacttctatcttatcaaatt 162  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||    
T  4005181 actgacacatgtaattacattcaatcacttctattttattaaatt 4005137  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 18262787 - 18262843
Alignment:
Q  118 actgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgtt 174  Q
    |||||||||||| ||||| | |||| | ||| || ||||||||||||||||||||||    
T  18262787 actgacacatgtgattactttcaattaattcaattttatcaaattattattggtgtt 18262843  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 19730684 - 19730627
Alignment:
Q  116 atactgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgt 173  Q
    ||||||||||  |||||||||||||||||||||||| || | |||||||||| |||||    
T  19730684 atactgacactagtaattacatacaatcacttctattttctaaaattattatcggtgt 19730627  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 20882057 - 20882001
Alignment:
Q  118 actgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgtt 174  Q
    |||||||| |||||||| |||| ||||||||||| || | |||||||||||||||||    
T  20882057 actgacacttgtaattaaatactatcacttctattttctaaaattattattggtgtt 20882001  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 36895413 - 36895359
Alignment:
Q  122 acacatgtaattacatacaatcacttctatcttatcaaattattattggtgttta 176  Q
    |||||||| ||||||| ||||||||| ||| ||||||||||||||  ||||||||    
T  36895413 acacatgtgattacattcaatcacttatattttatcaaattattacaggtgttta 36895359  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 19751296 - 19751239
Alignment:
Q  116 atactgacacatgtaattacatacaatcacttctatcttatcaaattattattggtgt 173  Q
    ||||||||||   ||||||||||||||||||||||| || | |||||||||| |||||    
T  19751296 atactgacactaataattacatacaatcacttctattttctaaaattattatcggtgt 19751239  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 28148379 - 28148332
Alignment:
Q  121 gacacatgtaattacatacaatcacttctatcttatcaaattattatt 168  Q
    ||||| ||| |||| |||||||||||||||| ||||||||||||||||    
T  28148379 gacacttgtgattatatacaatcacttctattttatcaaattattatt 28148332  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 3523433 - 3523387
Alignment:
Q  132 ttacatacaatcacttctatcttatcaaattattattggtgtttacg 178  Q
    |||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacg 3523387  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 7422214 - 7422170
Alignment:
Q  122 acacatgtaattacatacaatcacttctatcttatcaaattatta 166  Q
    |||||| ||||||||| ||||||||||||| || |||||||||||    
T  7422214 acacatataattacattcaatcacttctattttctcaaattatta 7422170  T

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