View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16025_high_1 (Length: 540)

Name: NF16025_high_1
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16025_high_1
NF16025_high_1
[»] chr6 (15 HSPs)
chr6 (18-531)||(1887967-1888493)
chr6 (18-441)||(1880671-1881090)
chr6 (18-194)||(1892815-1892991)
chr6 (18-195)||(1913519-1913696)
chr6 (18-194)||(1898144-1898320)
chr6 (322-458)||(1898833-1898969)
chr6 (18-193)||(1903444-1903619)
chr6 (18-193)||(1907677-1907852)
chr6 (273-442)||(1903989-1904158)
chr6 (273-442)||(1908222-1908391)
chr6 (269-441)||(1914098-1914270)
chr6 (325-440)||(1893124-1893239)
chr6 (433-478)||(1881369-1881414)
chr6 (476-522)||(1881428-1881474)
chr6 (304-424)||(1919119-1919239)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 1887967 - 1888493
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1887967 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagttgtagcattgt 1888066  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatttcaaaccatattgcttcact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888067 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatttcaaaccatattgcttcact 1888166  T
Q  218 acgacaaaaaattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaatatggtttatgcatggtcaat 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1888167 acgacaaaagattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaatatagtttatgcatggtcaat 1888266  T
Q  318 gcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888267 gcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgtt 1888366  T
Q  418 ggaaggtatagttaattcaatttttgaattggattcttggcattgttcttgctaattt-------------ttaatgatatggttgttgataatcattaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||| ||||||||||| |||||||||    
T  1888367 ggaaggtatagttaattcaatttttgaattggattcttggcattgttcttgctaatttttattgttccaacttaatgacatggttgttgagaatcattaa 1888466  T
Q  505 tttgtgcatttctttctatagtataat 531  Q
    |||||||||||||||||||||||||||    
T  1888467 tttgtgcatttctttctatagtataat 1888493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 1880671 - 1881090
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||| | ||| |||| ||||| |||||| ||||||||| |||||||||||    
T  1880671 atttcacaggtgcatatcttgaaagagttctcagatgaagtaactttagtcttgttatacaccataactgctaccatcatatcaacagttgtagcattgt 1880770  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatttcaaacca-tattgcttcac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| || |||  | |||||||  ||    
T  1880771 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagatacacttgaaagtactattgctgtac 1880870  T
Q  217 tacgacaaaaaattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaatatggtttatgcatggtcaa 316  Q
    |    |||| || |||||| |||||| ||  | |||||||| |     || ||||| ||||| |||||||||||| | | ||| |||||||||||||||     
T  1880871 ttgaccaaataaatttacagctcttaatttgacacatttatat-----ttctaggggatttttggaaaattaataagcagtatagtttatgcatggtcat 1880965  T
Q  317 tgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgt 416  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||    
T  1880966 tgcgcttaaagggagctgtctatgtaacatcattcaagccactccaaattgtgttttctgttgccttggctgttatattccttggtgatactcttcatgt 1881065  T
Q  417 tggaaggtatagttaattcaatttt 441  Q
    |||||||||| ||| ||||||||||    
T  1881066 tggaaggtatggtttattcaatttt 1881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 1892815 - 1892991
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||| ||| | |||||||||||||| || |||  ||| ||||||||| | ||| ||||||||||||||||| ||||||||| |||||||||||    
T  1892815 atttcacaggtgcatatcttgaaagagttccctgacgaagtaactttagtcttgttatacaccattactgccaccatcatatcaacagttgtagcattgt 1892914  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1892915 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatac 1892991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 1913519 - 1913696
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||||||| | |||||||||||||||||||||| ||| ||||||||| | || ||||| |||||||| ||| |||| |||| |||||| ||||    
T  1913519 atttcacaggtacatatcttgaaagagttcccagatgaactaactttagtcttgatatattccataactgccacaatcatatctacagttgtagctttgt 1913618  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagataca 195  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1913619 tatcagttccaaattcaagtgcttggataataggactaaatctctcacttatctccattgtttcttctgtaagataca 1913696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 1898144 - 1898320
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||||||| |  ||||||||||||||||||||| |||  ||  |||||||||| |||  |||||||||||| |||| | || |||||| ||||    
T  1898144 atttcacaggtacatatcatgaaagagttcccagatgaactaactctaaccttgctttacaccacaactgccaccatcatatctatagttgtagctttgt 1898243  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatac 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  1898244 tatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttcttctgtaagatac 1898320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 322 - 458
Target Start/End: Original strand, 1898833 - 1898969
Alignment:
Q  322 ttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaa 421  Q
    |||||||| || ||||||||||| |||||||||||||| |||||||||||||||| || |||  ||||||| || |||||||||||||||||||||||||    
T  1898833 ttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttatgtttcttggtgatactcttcatgttggaa 1898932  T
Q  422 ggtatagttaattcaatttttgaattggattcttggc 458  Q
    |||||||| ||||||||||||| ||| ||||||||||    
T  1898933 ggtatagtaaattcaatttttgcatttgattcttggc 1898969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 1903444 - 1903619
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||||||| | |||||||||||||||||||||| |||  || | ||| |||||||||  |||||||||||| |||| | || |||||| ||||    
T  1903444 atttcacaggtacatatcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgt 1903543  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata 193  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||| |||||| ||| ||||||||    
T  1903544 tatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata 1903619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 1907677 - 1907852
Alignment:
Q  18 atttcataggtacatgttttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagctgtagcattgt 117  Q
    |||||| |||||||| | |||||||||||||||||||||| |||  || | ||| |||||||||  |||||||||||| |||| | || |||||| ||||    
T  1907677 atttcacaggtacatatcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgt 1907776  T
Q  118 tatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata 193  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||| |||||| ||| ||||||||    
T  1907777 tatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata 1907852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 273 - 442
Target Start/End: Original strand, 1903989 - 1904158
Alignment:
Q  273 aattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatt 372  Q
    |||||| ||||| || ||||| ||||  |||| ||| |||||  | || |||||||| || ||||||||||| |||||||||||||| ||||||||||||    
T  1903989 aattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatt 1904088  T
Q  373 tctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt 442  Q
    |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  1904089 tctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt 1904158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 273 - 442
Target Start/End: Original strand, 1908222 - 1908391
Alignment:
Q  273 aattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatt 372  Q
    |||||| ||||| || ||||| ||||  |||| ||| |||||  | || |||||||| || ||||||||||| |||||||||||||| ||||||||||||    
T  1908222 aattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatt 1908321  T
Q  373 tctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt 442  Q
    |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  1908322 tctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt 1908391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 269 - 441
Target Start/End: Original strand, 1914098 - 1914270
Alignment:
Q  269 agggaattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgt 368  Q
    |||||||||| || || ||||| || || || |||| ||| ||| |||| |  |||||||| |||||||||||||| |||||||||||||| ||||||||    
T  1914098 agggaattttcgggaagttaatcggtaacatagtttctgcctgggcaatacacttaaagggggctgtctatgtaacctcattcaagccactgcaaattgt 1914197  T
Q  369 tatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt 441  Q
    ||| ||||||   ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1914198 tatctctgtttggttgggagttatattccttggtgatactcttcatcttggaaggtatggttaattcaatttt 1914270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 440
Target Start/End: Original strand, 1893124 - 1893239
Alignment:
Q  325 aagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggt 424  Q
    ||||| |||||||||||||| ||||||||||| || ||||||||||||||||||| |||  | ||||||||||||||||||| ||||||| |||||||||    
T  1893124 aagggggctgtctatgtaacctcattcaagcctctacaaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggt 1893223  T
Q  425 atagttaattcaattt 440  Q
    || ||||||| |||||    
T  1893224 atggttaatttaattt 1893239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 1881369 - 1881414
Alignment:
Q  433 ttcaatttttgaattggattcttggcattgttcttgctaattttta 478  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||    
T  1881369 ttcaatatttgaattggatttttggcattgttcttgctaattttta 1881414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 522
Target Start/End: Original strand, 1881428 - 1881474
Alignment:
Q  476 ttaatgatatggttgttgataatcattaatttgtgcatttctttcta 522  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  1881428 ttaatcatatggttgttgacaatcattaatttgtgtatttctttcta 1881474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 424
Target Start/End: Original strand, 1919119 - 1919239
Alignment:
Q  304 tatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtg 403  Q
    ||||| ||| |||| | |||||||||  |||| |||| ||||   |||||||||||   |||||||||| |||||||  || || || | ||||||||||    
T  1919119 tatgcttgggcaatacatttaaagggtcctgtatatgcaacaatgttcaagccactttcaattgttattgctgttgctatgggtattttgttccttggtg 1919218  T
Q  404 atactcttcatgttggaaggt 424  Q
    ||||||||||| |||||||||    
T  1919219 atactcttcatattggaaggt 1919239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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