View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16025_high_11 (Length: 240)
Name: NF16025_high_11
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_high_11 |
 | |
|
| [»] scaffold0094 (2 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
| [»] scaffold1043 (2 HSPs) |
| | |
|
| [»] scaffold0170 (1 HSPs) |
| | |
|
| [»] scaffold1405 (1 HSPs) |
| | |
|
| [»] scaffold0010 (2 HSPs) |
| | |
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| [»] scaffold0364 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18554934 - 18555150
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18554934 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttagggtcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
18555033 |
T |
|
| Q |
101 |
cagatgtgaaatcgcgatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatac |
200 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18555034 |
caga---gaatctgcaatttctgtacccgaaataaaatcaaaagctgggacttttctgttccgaattaggtttcgatgtcttcttgaaagttgtagatat |
18555130 |
T |
|
| Q |
201 |
gactgttagctttaatttgg |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18555131 |
gactgttagctttaatttgg |
18555150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15871167 - 15871399
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15871167 |
tgtttcaatgatagggtagtcatggagtgaagattagggtcgagtttggcgagtttagggtcgaaaacggagttaggaaaggtcccttaaggctaaatcg |
15871266 |
T |
|
| Q |
101 |
cagatgtgaaatcgc-----------gatttctgtacccgaaataaa-atcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaa |
188 |
Q |
| |
|
|| ||| ||||||| |||||||||| |||||| ||| | ||||||||| |||||| |||| ||||||| ||| | ||||||| | || |
|
|
| T |
15871267 |
cacatgcaaaatcgcagaaaatctgtgatttctgtaaccgaaacaaacaataaaaactggcacttttctgttgagaattagattttggtgtcttcataaa |
15871366 |
T |
|
| Q |
189 |
agttgtagatacgactgttagctttaatttggc |
221 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |
|
|
| T |
15871367 |
agttgtagatatgcatgttagctttaatttggc |
15871399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15888743 - 15888975
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15888743 |
tgtttcaatgatagggtagtcatggagtgaagattagggtcgagtttggcgagtttagggtcgaaaacggagctaggaaaggtcccttaaggctaaatcg |
15888842 |
T |
|
| Q |
101 |
cagatgtgaaatc-----------gcgatttctgtacccgaaataaa-atcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaa |
188 |
Q |
| |
|
|| ||| |||||| | |||||||||| |||||| ||| | ||||||||| |||||| |||| ||||||| ||||| ||||||| |||| |
|
|
| T |
15888843 |
cacatgcgaaatcacagaaaatctgtgatttctgtaaccgaaacaaacaataaaaactggcacttttctgttgagaattagatttcggtgtcttcatgaa |
15888942 |
T |
|
| Q |
189 |
agttgtagatacgactgttagctttaatttggc |
221 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| |
|
|
| T |
15888943 |
agttgtagatatgcatgttagctttaaattggc |
15888975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 13267900 - 13267788
Alignment:
| Q |
3 |
tttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgca |
102 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13267900 |
tttgaatgatagggtagtcatggagtgaagattagggtcgagtttggtgagtttagggtcgaaaacggagttaggaaaggtcccttaaggctaaatcgca |
13267801 |
T |
|
| Q |
103 |
gatgtgaaatcgc |
115 |
Q |
| |
|
||| |||||||| |
|
|
| T |
13267800 |
tatgcgaaatcgc |
13267788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12230709 - 12230608
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
12230709 |
tgtttgaatgatagggtaatcatggattaaagattagggtcgagtttggcaagtttagggtcgaaaatggagttaggaaaggttccttaaggctaaatcg |
12230610 |
T |
|
| Q |
101 |
ca |
102 |
Q |
| |
|
|| |
|
|
| T |
12230609 |
ca |
12230608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 13235125 - 13235015
Alignment:
| Q |
5 |
tgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgcaga |
104 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| | ||||||||||||||||| ||||||||| || ||||||| |||||||| ||||||||| ||| |
|
|
| T |
13235125 |
tgaatgatagggtagtcatggagtgaagattaggctgaggtttggcgagtttagggtcgaaaacgaaggtaggaaaaatcccttaaggctaaatcgtaga |
13235026 |
T |
|
| Q |
105 |
tgtgaaatcgc |
115 |
Q |
| |
|
||||||||||| |
|
|
| T |
13235025 |
tgtgaaatcgc |
13235015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 13559585 - 13559687
Alignment:
| Q |
3 |
tttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgca |
102 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||| |||| | || ||||||||||| |
|
|
| T |
13559585 |
tttgaatgatagggtaatcatggagtgaagattagaatcgggtttggtgagtttagggttgaaaacggagttaggaaaagtccttcaaggctaaatcgca |
13559684 |
T |
|
| Q |
103 |
gat |
105 |
Q |
| |
|
||| |
|
|
| T |
13559685 |
gat |
13559687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17419361 - 17419258
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| | || | |||||||||||| |||||| ||||||||| |||||| ||||||||| |||||||||||||||| ||| || |||||| |
|
|
| T |
17419361 |
tgtttgaatgataggttaatcacggagtgaagattggggtcgagtttggcgaatttagggtcgaaaacgaagttaggaaaggtcccctaaggcgaaatcg |
17419262 |
T |
|
| Q |
101 |
caga |
104 |
Q |
| |
|
|||| |
|
|
| T |
17419261 |
caga |
17419258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19727762 - 19727844
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggag--tgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaag |
81 |
Q |
| |
|
||||||||||||||| | || |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
19727762 |
tgtttgaatgataggttaatcatggagagtgaagattagggtcgagtttggcgagtttagggtcgaaaacgaagttaggaaag |
19727844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 17419235 - 17419162
Alignment:
| Q |
144 |
actgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||||||| |||| || ||||| |||| ||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
17419235 |
actgggacttttctgttgagagttaggattcggtgtcttcatgaaagttgtagatatgagtgttagctttaatt |
17419162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 19727872 - 19727942
Alignment:
| Q |
147 |
gggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||| | ||||||||||||| | | |||||||||||| |
|
|
| T |
19727872 |
gggacttttttgttccgaattaggattgggtgtcttcataaaagttgtagatatgcgttttagctttaatt |
19727942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20872444 - 20872517
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatgga-gtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagt |
73 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| |||||||||| |||||| |||| | ||||||||||||||| |
|
|
| T |
20872444 |
tgtttgaatgatagggtaatcatggaagtgaatattagggtcgagtttggagagtacatgatcgaaaacggagt |
20872517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 19545358 - 19545580
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19545358 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttagggtcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
19545457 |
T |
|
| Q |
101 |
cagatgtgaaatcgcgatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatac |
200 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
19545458 |
caga---gaatctgcaatttctgtacccgaaataaaatcaaaagctgggacttttctgttccgaattaggtttcgatgtcttcttcaaagttgtatatat |
19545554 |
T |
|
| Q |
201 |
gactgttagctttaatttggcctttg |
226 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
19545555 |
gactgttagctttaatttggcgtttg |
19545580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 14746414 - 14746242
Alignment:
| Q |
25 |
gagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgcagatgtgaaatc-gcgatttctg |
123 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||| ||||| |||||||||| |
|
|
| T |
14746414 |
gagtgaagattagggttgagtttggcgagtttaggatcgaaaacgaagttaggaaaggtcccctaaggtgaaatcgcaga----aaatctgcgatttctg |
14746319 |
T |
|
| Q |
124 |
tacccg-aaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|| || ||| |||| |||||||||||||||| || || |||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
14746318 |
taatcgaaaacaaaaataaaaactgggacttttctgctcagaattaggattcagtgtcttcatgaaagttgtagata |
14746242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 22395670 - 22395884
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| | || | || |||||||||||||||| ||||| ||||||||| | |||||| |||||||||||||||| ||| | |||||| |
|
|
| T |
22395670 |
tgtttgaatgataggttaatcacggggtgaagattagggtcgagtttgaagagtttagggtgtaaaacgaagttaggaaaggtcccctaagacgaaatcg |
22395769 |
T |
|
| Q |
101 |
cagatgtgaaatc-gcgatttctgtacccg-aaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagat |
198 |
Q |
| |
|
|||| ||||| ||||||| |||| ||| ||| |||| |||||||| | ||||| |||| |||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
22395770 |
caga----aaatctgcgatttttgtaaccgaaaagaaaaataaaaactgaggcttttctgttgagaattaggattcgttgtcttcaggaaagttgtagat |
22395865 |
T |
|
| Q |
199 |
acgactgttagctttaatt |
217 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
22395866 |
atgagtcttagctttaatt |
22395884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18985445 - 18985672
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18985445 |
tgtttgaatgataggttgatgatggagtgcagattagggtcgaatttggcgagtttagggtcgaaaacggagttaggaaaggtcccttaatactaaatcg |
18985544 |
T |
|
| Q |
101 |
cagatgtgaaat-----------cgcgatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaa |
189 |
Q |
| |
|
|||||| ||||| |||||||||||| || ||| |||| | |||||||||||||| || | ||| ||||||||| ||||||| ||||| |
|
|
| T |
18985545 |
cagatgcgaaattgcagataatctgcgatttctgtaaccaaaacaaaaatacaaactgggacttttccgtacagaactaggtttcggtgtcttcatgaaa |
18985644 |
T |
|
| Q |
190 |
gttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||||| || |||||||||||||| |
|
|
| T |
18985645 |
gttgtagatatgaatgttagctttaatt |
18985672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 23908561 - 23908459
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| | || || ||||||| |||||||||| |||||| ||||||||| || ||| || |||||||||||||||| ||| || |||||| |
|
|
| T |
23908561 |
tgtttgaatgatagg-taatcatagagtgaatattagggtcgagtttggtgagtttagggtcaaaagcgaagttaggaaaggtcccctaaggcgaaatcg |
23908463 |
T |
|
| Q |
101 |
caga |
104 |
Q |
| |
|
|||| |
|
|
| T |
23908462 |
caga |
23908459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 19445181 - 19445240
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19445181 |
aaaaactgggacttttctgttcataattaggtttttatgtcttcctgaaagttgtagata |
19445240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22497423 - 22497495
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagt |
73 |
Q |
| |
|
||||||||| ||||||| || | || |||||||||||||||| ||||| |||| ||||||| ||||| |||| |
|
|
| T |
22497423 |
tgtttgaataatagggtaatcacggggtgaagattagggtcgattttggagagtataggatcaaaaacagagt |
22497495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2713 - 2827
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2713 |
tgtttgaataatagggtgatgatggagtgaagattcgggttgggtttggcgagtttagggtcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
2812 |
T |
|
| Q |
101 |
cagatgtgaaatcgc |
115 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
2813 |
cagatgcgaaatcgc |
2827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 2876 - 2936
Alignment:
| Q |
166 |
ttaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaatttggcctttg |
226 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||| || |||||||||||||||||| |||| |
|
|
| T |
2876 |
ttaggtttcgatgtctgcttaaaatttgtagatatgaatgttagctttaatttggcgtttg |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27868491 - 27868718
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27868491 |
tgtttgaatgataggttgattatggagtgaatattagggttgagtttggcgagtttagggtcgaaaacggatataggaaaggtcccttaatgctaaatcg |
27868590 |
T |
|
| Q |
101 |
cagatgtgaaatc-----------gcgatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaa |
189 |
Q |
| |
|
||||| |||||| || ||||||||||||| || |||| |||||||||||||||| ||||| ||||||||||| | ||||||| | ||| |
|
|
| T |
27868591 |
tagatgcgaaatcacagaaaatcggctatttctgtacccggaacaaaaataaaaactgggacttttctgttcagaattaggttttggtgtcttcataaaa |
27868690 |
T |
|
| Q |
190 |
gttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||| ||| || |||||||||||||| |
|
|
| T |
27868691 |
gttgtatatatgaatgttagctttaatt |
27868718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 16358040 - 16358154
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
16358040 |
tgtttcaatgatagggtagtcatggagtgaagattagggtcgaatttggcgagtttagggtcgaaaacggagctaggaaaggtcccttgaggctaaatcg |
16358139 |
T |
|
| Q |
101 |
cagatgtgaaatcgc |
115 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
16358140 |
cacatgcgaaatcgc |
16358154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19186679 - 19186566
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
19186679 |
tgtttgaatgatagggtagtcatggagtgaagattacggtcgagtttggcgagtttagggtcgaaaa-ggagttaggaaaggtcccttaaggctaaatcg |
19186581 |
T |
|
| Q |
101 |
cagatgtgaaatcgc |
115 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
19186580 |
cacatgcaaaatcgc |
19186566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22161627 - 22161513
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||| | ||||||| | |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
22161627 |
tgtttgaatgatagggtagtcatggagtaactattagggtcgagtttggcgagtttagggtcgaaaacggagttagaaaaggtcccttaaggctaaatcg |
22161528 |
T |
|
| Q |
101 |
cagatgtgaaatcgc |
115 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
22161527 |
cacatgcgaaatcgc |
22161513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10302626 - 10302410
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||| || |||||||||||||||| | |||||||||||||||||| ||| | || ||||||||| |
|
|
| T |
10302626 |
tgtttgaatgatagggtaatcatggattgaagattagaatcatgtttggcgagtttagggttgaaaacggagttaggaaaagtctatcaaggctaaatcg |
10302527 |
T |
|
| Q |
101 |
cagatgtgaaatcgc-gatttctgtacccgaaataa-aatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagat |
198 |
Q |
| |
|
|| ||| |||||||| |||||| ||| || ||| || ||| |||||||| |||||| ||||| ||||||| || | ||| ||| |||||||||||||| |
|
|
| T |
10302526 |
catatgggaaatcgcagatttcggtaaccaaaacaagaat--aaaactggaacttttatgttcataattaggctttggtgtattcatgaaagttgtagat |
10302429 |
T |
|
| Q |
199 |
acgactgttagctttaatt |
217 |
Q |
| |
|
| | |||||| ||||||| |
|
|
| T |
10302428 |
atgcatgttagatttaatt |
10302410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21977001 - 21976903
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatc |
99 |
Q |
| |
|
||||||||||| ||||| | ||||||| || |||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21977001 |
tgtttgaatgacagggtagtcatggagtaaatattagggtcgagtttggcgagtttagggttgaaaacggagttaggaaaggtcccttaaggctaaatc |
21976903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21999432 - 21999334
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatc |
99 |
Q |
| |
|
||||||||||| ||||| | ||||||| || |||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21999432 |
tgtttgaatgacagggtagtcatggagtaaatattagggtcgagtttggcgagtttagggttgaaaacggagttaggaaaggtcccttaaggctaaatc |
21999334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10340952 - 10340848
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||| || ||||| |||||||||| | |||||||||||||||||| |||| | || ||||||||| |
|
|
| T |
10340952 |
tgtttgaatgataggttaattatggagtgaagattagaatcatgtttgacgagtttagggttgaaaacggagttaggaaaagtccatgaaggctaaatcg |
10340853 |
T |
|
| Q |
101 |
cagat |
105 |
Q |
| |
|
||||| |
|
|
| T |
10340852 |
cagat |
10340848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12065 - 12292
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
12065 |
tgtttgaattataggttgatgatggagtgcagattagggtcgagtttggcgagtttagggtcgaaaatggagttaggaaaggttccttaatactaaatcg |
12164 |
T |
|
| Q |
101 |
cagatg------tg----aaatc-gcgatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaa |
189 |
Q |
| |
|
|||||| || ||||| ||||| ||| ||||| ||| ||| | |||||||||||||| ||| | ||| ||||||||| ||||||| ||||| |
|
|
| T |
12165 |
cagatgcaaaattgcagaaaatctgcgatatctatacccaaaacaaatatacaaactgggacttttatgtacagaactaggtttcggtgtcttcatgaaa |
12264 |
T |
|
| Q |
190 |
gttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||||| || |||||||||||||| |
|
|
| T |
12265 |
gttgtagatatgaatgttagctttaatt |
12292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11800193 - 11800406
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
11800193 |
tgtttcaatgatagggtaatcatggagtgaagattagggttgagtttggcgagtttagggtcgaaaacggagttaggaaaggt-ctttaaggctaaatcg |
11800291 |
T |
|
| Q |
101 |
cagatgtgaaat-cgcgatttctgtacccgaaa-taaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagat |
198 |
Q |
| |
|
|||| |||| |||||||||||| |||||| |||| |||||||||| | ||| ||||||||||||||||| | ||||||| ||||||||||| | |
|
|
| T |
11800292 |
caga----aaatatgcgatttctgtaaccgaaacaaaaaataaaaactgggtcctttatgttccgaattaggttttggtgtcttcatgaaagttgtatct |
11800387 |
T |
|
| Q |
199 |
acgactgttagctttaatt |
217 |
Q |
| |
|
| || |||||| ||||||| |
|
|
| T |
11800388 |
atgattgttagttttaatt |
11800406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 16068289 - 16068504
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
|||||||||| |||| | || ||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||||||| ||| || |||||| |
|
|
| T |
16068289 |
tgtttgaatgttaggttaatcatggagtgaaggttagggttgagtttggcgagtttagggtcgaaaacgaagttaggaaaggtcctataaggcgaaatcg |
16068388 |
T |
|
| Q |
101 |
cagatgtgaaat-cgcgatttctgtacccgaaa--taaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtaga |
197 |
Q |
| |
|
|||| |||| | |||||||||| |||||| ||||| ||| |||||||||||| |||| |||||||| || | ||||| | ||||||||||||| |
|
|
| T |
16068389 |
caga----aaatatgtgatttctgtaaccgaaaacaaaaatgaaacactgggacttttctgtttagaattaggatttggtgtctgcatgaaagttgtaga |
16068484 |
T |
|
| Q |
198 |
tacgactgttagctttaatt |
217 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
16068485 |
tatgagtgttatctttaatt |
16068504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 9693208 - 9693310
Alignment:
| Q |
3 |
tttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgca |
102 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||| |||| | || ||||||||||| |
|
|
| T |
9693208 |
tttgaatgatagggtaatcatggagtgaagattagaatcgggtttggtgagtttagggttgaaaacggagttaggaaaagtccttcaaggctaaatcgca |
9693307 |
T |
|
| Q |
103 |
gat |
105 |
Q |
| |
|
||| |
|
|
| T |
9693308 |
gat |
9693310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 11800494 - 11800549
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgta |
195 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
11800494 |
aaaaactgggtcttttatgttccgaattaggttttagtgtcttcatgaaagttgta |
11800549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 16379276 - 16379345
Alignment:
| Q |
33 |
attagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgca |
102 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||| ||| ||||||| ||| || |||||||| |
|
|
| T |
16379276 |
attagggtcgagtttggcgagtttagggtcgaaattggagtcagggaaggtcctctaaggcgaaatcgca |
16379345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16028 - 15797
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||| ||||||| | |||||||||| ||||||| || ||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
16028 |
tgtttgaatcatagggtagtcatggagtgaatattagggccgagtttggcaagtttagggtcgaaaacagagttaggaaaggtcccttaaggctaaatcg |
15929 |
T |
|
| Q |
101 |
cagatgtgaaatcgc-----------gatttctgtacccgaaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaa |
189 |
Q |
| |
|
|| ||| |||||||| |||||||||| |||||| |||| | ||||||| |||||| |||| ||||||| ||||| ||||||| ||||| |
|
|
| T |
15928 |
cacatgcgaaatcgcagaaaatctgtgatttctgtaaccgaaacaaaaaaataaactggcacttttctgttgagaattagatttcggtgtcttcatgaaa |
15829 |
T |
|
| Q |
190 |
gttgtagatacgactgttagctttaatttggc |
221 |
Q |
| |
|
||||||| || | |||||||||||||||||| |
|
|
| T |
15828 |
gttgtagctatgtatgttagctttaatttggc |
15797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11851 - 11737
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
11851 |
tgtttgaatgatagggtagtcatggagtgaagattagggtcgagtttggtgagtttagggtcgaaaacggagttaggaaatgtcccttaaggctaaatcg |
11752 |
T |
|
| Q |
101 |
cagatgtgaaatcgc |
115 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
11751 |
cacatgcgaaatcgc |
11737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 14850 - 14678
Alignment:
| Q |
25 |
gagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgcagatgtgaaatc-gcgatttctg |
123 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||| ||||| |||||||||| |
|
|
| T |
14850 |
gagtgaagattagggttgagtttggcgagtttaggatcgaaaacgaagttaggaaaggtcccctaaggtgaaatcgcaga----aaatctgcgatttctg |
14755 |
T |
|
| Q |
124 |
tacccg-aaataaaatcaaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|| || ||| |||| |||||||||||||||| || || |||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
14754 |
taatcgaaaacaaaaataaaaactgggacttttctgctcagaattaggattcagtgtcttcatgaaagttgtagata |
14678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23909063 - 23908962
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcg |
100 |
Q |
| |
|
|||||| |||||||||| || ||||||| |||||||| | |||||||||||||||||| | |||||||||||||||||| | || | || ||||||||| |
|
|
| T |
23909063 |
tgtttgcatgatagggtaatcatggagtaaagattagaattgggtttggcgagtttagggttgaaaacggagttaggaaaagcccttcaaggctaaatcg |
23908964 |
T |
|
| Q |
101 |
ca |
102 |
Q |
| |
|
|| |
|
|
| T |
23908963 |
ca |
23908962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 25581896 - 25581955
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25581896 |
aaaaactgggacttttctattcataattaggttttgatgtcttcatgaaagttgtagata |
25581955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 13938499 - 13938442
Alignment:
| Q |
157 |
tgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagcttta |
214 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
13938499 |
tgttccgaattaggtttgggcgtcttcatgaaagttgtagatatgaatgttagcttta |
13938442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 23908937 - 23908862
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaa |
215 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || | ||||||| | ||||||||||||| | ||||||||||| |
|
|
| T |
23908937 |
aaaaactgggacttttctgttcagaattaggctttggtgtcttcattaaagttgtagatatgcaagttagctttaa |
23908862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 25581570 - 25581634
Alignment:
| Q |
9 |
tgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagt |
73 |
Q |
| |
|
|||||| || || |||| |||||||||||||||| |||||| |||| || |||| |||||||||| |
|
|
| T |
25581570 |
tgatagtgtaatcatggggtgaagattagggtcgagtttggagagtatacgatcaaaaacggagt |
25581634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 17861586 - 17861642
Alignment:
| Q |
25 |
gagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaag |
81 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
17861586 |
gagtgaagattagggtcgagtttggcgagtttagggtcgaaaacgaagttaggaaag |
17861642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 743 - 823
Alignment:
| Q |
1 |
tgtttgaatgatagggtgatgatggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaag |
81 |
Q |
| |
|
||||| ||||||| | | || |||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
743 |
tgttttaatgataagttaatcatggagtgaagattagggtcaagtttggcgagtttagggtcaaaaacgaagttaggaaag |
823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 848 - 921
Alignment:
| Q |
144 |
actgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||||||| ||||| |||||||| || | ||||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
848 |
actgggacttttctgttcagaattaggatttggtgtcttcatgaaagttgtagatatgtgttttagctttaatt |
921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 21496417 - 21496353
Alignment:
| Q |
22 |
atggagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtccc |
86 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
21496417 |
atggagtgaatattagggttgtgtttggcgagtttagggtcgaaaacggagttaagaaagttccc |
21496353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 18001 - 17922
Alignment:
| Q |
25 |
gagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaaggtcccttaatgctaaatcgcaga |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | |||| | |||||||||||||||| ||| || ||| |||||| |
|
|
| T |
18001 |
gagtgaagattagggtcgagtttggcgagtttagggttaaaaatgaagttaggaaaggtcccctaaggcgaaagcgcaga |
17922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1405 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1405
Description:
Target: scaffold1405; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 1451 - 1392
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1451 |
aaaaactgggacttttctattcataattaggttttgatgtcttcgtgaaagttgtagata |
1392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 142959 - 142903
Alignment:
| Q |
25 |
gagtgaagattagggtcgggtttggcgagtttaggatcgaaaacggagttaggaaag |
81 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| || |||||| ||||| ||||| |
|
|
| T |
142959 |
gagtgaagattaaggtcgagtttggcgagtttagggtcaaaaacgaagttacgaaag |
142903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 142874 - 142805
Alignment:
| Q |
148 |
ggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagatacgactgttagctttaatt |
217 |
Q |
| |
|
|||||||| ||||| |||||||| || | ||||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
142874 |
ggacttttctgttcagaattaggatttggtgtcttcatgaaagttgtagatatgcgttttagctttaatt |
142805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 14118 - 14059
Alignment:
| Q |
140 |
aaaaactgggacttttttgttccgaattaggtttcgatgtcttcttgaaagttgtagata |
199 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| || ||||| ||||||||||||||| |
|
|
| T |
14118 |
aaaaactgggacttttctgttcataattaggtttttatttcttcatgaaagttgtagata |
14059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 13918 - 13877
Alignment:
| Q |
157 |
tgttccgaattaggtttcgatgtcttcttgaaagttgtagat |
198 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
13918 |
tgttccgaattaggtttggaagtcttcatgaaagttgtagat |
13877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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