View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16025_high_12 (Length: 227)

Name: NF16025_high_12
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16025_high_12
NF16025_high_12
[»] chr7 (2 HSPs)
chr7 (12-227)||(16067944-16068159)
chr7 (134-227)||(9692997-9693090)
[»] scaffold0010 (1 HSPs)
scaffold0010 (11-227)||(143115-143331)
[»] scaffold0408 (1 HSPs)
scaffold0408 (19-227)||(14997-15205)
[»] chr6 (5 HSPs)
chr6 (19-227)||(14746562-14746770)
chr6 (11-183)||(22395344-22395516)
chr6 (134-227)||(19545153-19545241)
chr6 (85-127)||(11796138-11796180)
chr6 (84-125)||(34487909-34487950)
[»] scaffold1043 (1 HSPs)
scaffold1043 (12-227)||(402-618)
[»] chr5 (6 HSPs)
chr5 (11-227)||(25791840-25792056)
chr5 (11-178)||(25756188-25756355)
chr5 (11-141)||(19020257-19020386)
chr5 (134-214)||(32948837-32948916)
chr5 (148-227)||(14137962-14138041)
chr5 (171-227)||(23909179-23909235)
[»] chr4 (11 HSPs)
chr4 (11-227)||(17419493-17419705)
chr4 (134-224)||(19727541-19727631)
chr4 (11-92)||(19727457-19727538)
chr4 (137-227)||(12230820-12230910)
chr4 (134-227)||(13559374-13559467)
chr4 (134-224)||(13268034-13268124)
chr4 (134-227)||(15870955-15871048)
chr4 (134-227)||(18554729-18554817)
chr4 (126-227)||(15888522-15888623)
chr4 (136-224)||(13235248-13235326)
chr4 (134-173)||(9886987-9887026)
[»] scaffold0061 (2 HSPs)
scaffold0061 (11-141)||(16550-16680)
scaffold0061 (11-141)||(25608-25738)
[»] chr2 (4 HSPs)
chr2 (134-227)||(29718105-29718198)
chr2 (134-202)||(18985282-18985350)
chr2 (134-221)||(26861220-26861307)
chr2 (11-90)||(22521725-22521805)
[»] chr3 (8 HSPs)
chr3 (135-227)||(21977117-21977209)
chr3 (135-227)||(21999548-21999640)
chr3 (134-214)||(10302744-10302824)
chr3 (135-227)||(22161743-22161835)
chr3 (134-225)||(19186796-19186887)
chr3 (134-227)||(10341068-10341161)
chr3 (134-227)||(16357828-16357920)
chr3 (126-221)||(16928570-16928663)
[»] scaffold0364 (1 HSPs)
scaffold0364 (134-214)||(14588-14668)
[»] scaffold0118 (1 HSPs)
scaffold0118 (135-227)||(11968-12060)
[»] scaffold0385 (1 HSPs)
scaffold0385 (134-227)||(16157-16250)
[»] scaffold0290 (1 HSPs)
scaffold0290 (134-227)||(11843-11936)
[»] chr8 (4 HSPs)
chr8 (135-227)||(10454081-10454173)
chr8 (180-227)||(17861384-17861431)
chr8 (134-227)||(15727766-15727862)
chr8 (188-227)||(1683242-1683281)
[»] scaffold0207 (1 HSPs)
scaffold0207 (140-214)||(752-827)
[»] chr1 (1 HSPs)
chr1 (134-219)||(21496583-21496667)
[»] scaffold0094 (1 HSPs)
scaffold0094 (134-224)||(2509-2593)
[»] scaffold0381 (1 HSPs)
scaffold0381 (134-173)||(11518-11557)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 16067944 - 16068159
Alignment:
12 gagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacgag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
16067944 gagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacaag 16068043  T
112 gggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatg 211  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16068044 gggataaattagatgtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatg 16068143  T
212 atgtgaattttgatga 227  Q
    ||||||||||||||||    
16068144 atgtgaattttgatga 16068159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 9692997 - 9693090
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||| ||| ||||||||    
9692997 gagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgatga 9693090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 143331 - 143115
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||||||||||||    
143331 tgagatgaataagcattgatgtcattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 143232  T
111 ggggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttat 210  Q
    | |||||||||||||||||| | | |||||||| || |||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
143231 gtggatagattagatgtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttat 143132  T
211 gatgtgaattttgatga 227  Q
    |||||||||||||||||    
143131 gatgtgaattttgatga 143115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 15205 - 14997
Alignment:
19 ataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacgaggggatag 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||  || |||||||||||||||||||||||||||||||||||||||||||    
15205 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 15106  T
119 attagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaa 218  Q
    |||||||||||| | ||||||||||||| | |||||||||||||||||||| | || ||||| |||||||||||| ||||||||||||||||||||||||    
15105 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 15006  T
219 ttttgatga 227  Q
    |||| ||||    
15005 tttttatga 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 14746770 - 14746562
Alignment:
19 ataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacgaggggatag 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||  || |||||||||||||||||||||||||||||||||||||||||||    
14746770 ataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgaagatgacactcttaaggagtatcttaggccaacgaggggatag 14746671  T
119 attagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaa 218  Q
    |||||||||||| | ||||||||||||| | |||||||||||||||||||| | || ||||| |||||||||||| ||||||||||||||||||||||||    
14746670 attagatgtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaa 14746571  T
219 ttttgatga 227  Q
    |||| ||||    
14746570 tttttatga 14746562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 22395344 - 22395516
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||| |||||  |||||||| | ||| |||||| ||||||||||||| ||    
22395344 tgaggtgaataagcattgatgttattctttagatgacaagtagtgatggttccagcttatgttgtagatgccgctcataaggaatatcttaggccaatga 22395443  T
111 ggggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtct 183  Q
    ||||||| ||| |||||||| | |||| |||||||| |||||||||||||||| ||||| |||||||||||||    
22395444 ggggataaattggatgtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtct 22395516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 19545153 - 19545241
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||||||     ||||||||||||||| ||||||| ||||||||||||||||    
19545153 gagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgatga 19545241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 11796138 - 11796180
Alignment:
85 tcttaaggagtatcttaggccaacgaggggatagattagatgt 127  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||    
11796138 tcttaaggagtatcttatgccaacgaggggaaagattaaatgt 11796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 34487950 - 34487909
Alignment:
84 ctcttaaggagtatcttaggccaacgaggggatagattagat 125  Q
    ||||||||| ||||| |||||||||||||||| |||||||||    
34487950 ctcttaaggtgtatcataggccaacgaggggagagattagat 34487909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 402 - 618
Alignment:
12 gagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacgag 111  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||   ||||| |||||  |||||||||||||||||||||||||||||||||||||||    
402 gagatggataagcattgatgttattctttagatgacaagtagggatgattccagcttatgttgtagatgacactcttaaggagtatcttaggccaacgag 501  T
112 gggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaa-ttttaatatgttgttactgttat 210  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||    
502 gggatagattagatgtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttat 601  T
211 gatgtgaattttgatga 227  Q
    ||| |||||||| ||||    
602 gatatgaatttttatga 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 25792056 - 25791840
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||   |||| | |||||  |||||||||| |||||||||||||||||||| ||||||    
25792056 tgagattaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25791957  T
111 ggggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttat 210  Q
    ||||| | |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||    
25791956 ggggacaaattagatgtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttat 25791857  T
211 gatgtgaattttgatga 227  Q
    |||||||| ||||||||    
25791856 gatgtgaactttgatga 25791840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 25756188 - 25756355
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||   |||| | |||||  |||||||||| |||||||||||||||||||| ||||||    
25756188 tgagatgaataagcattgattttattctttagatgacaagtagtggtggttcgagcttatactgtagatgacgctcttaaggagtatcttaggtcaacga 25756287  T
111 ggggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggt 178  Q
    ||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||    
25756288 ggggacatattagatgtaagagggagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 19020386 - 19020257
Alignment:
11 tgagatgaataagcattgatgttattctttagatgac-aagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacg 109  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||  ||||||||||    ||| |||| | |||||||||||||||||||||||| |    
19020386 tgagatgaataagcattgatgttattatttagatgacaaagtagtgatggttccaacttgggttgttgatggcgctcttaaggagtatcttaggccaatg 19020287  T
110 aggggatagattagatgtaagagagagaatct 141  Q
    |  ||| |||||||||||||| | ||||||||    
19020286 a--ggagagattagatgtaagggggagaatct 19020257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 32948916 - 32948837
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatg 214  Q
    ||||||||||||| ||||| |||||| ||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||    
32948916 gagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 14138041 - 14137962
Alignment:
148 tttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||||||| | | ||| |||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||    
14138041 tttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgttgttgttatgctgtgaattttgatga 14137962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 23909235 - 23909179
Alignment:
171 gggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||    
23909235 gggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatga 23909179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 17419705 - 17419493
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaag-tagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacg 109  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||  ||||  ||||||||  |||||||||||||||||||||||||||    
17419705 tgagatgaataagcattgatgttattctttatatgacaaggtagtgatggttccagtttatgttgtagatggtactcttaaggagtatcttaggccaacg 17419606  T
110 aggggatagattagatgtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgtta 209  Q
    || ||||||||     ||||| |  |||||||||||| |||||||||||||||||||||| || ||  |||| ||||||||||| ||||||||||| |||    
17419605 agtggatagat-----gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactatta 17419511  T
210 tgatgtgaattttgatga 227  Q
    ||||||||||||||||||    
17419510 tgatgtgaattttgatga 17419493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 19727541 - 19727631
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttga 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
19727541 gagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttga 19727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 19727457 - 19727538
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaagg 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
19727457 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttatgttgtagatgacactcttaagg 19727538  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 12230910 - 12230820
Alignment:
137 aatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
12230910 aatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaattttgatga 12230820  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 13559374 - 13559467
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||| ||| ||||||||    
13559374 gagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgatga 13559467  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 13268124 - 13268034
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttga 224  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||  |||||  ||||||||||||||||||||    
13268124 gagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttga 13268034  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 15870955 - 15871048
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    | || |||||||||||| |||||||||||    
15870955 gagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttgatga 15871048  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 18554729 - 18554817
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||||||||     ||||||||||||| ||||||||||||||||||||||||    
18554729 gagaatctttgcactttagggtatcttaatctatgatatgagggttgtctt-----ttaatatgttgttgctgttatgatgtgaattttgatga 18554817  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 15888522 - 15888623
Alignment:
126 gtaagagagagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 225  Q
    ||||||| ||||||||||||| |||||| ||||| ||| ||||| ||||||||||||||||||||||||    | || |||||||||||| ||| |||||    
15888522 gtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaatattgat 15888621  T
226 ga 227  Q
    ||    
15888622 ga 15888623  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 13235326 - 13235248
Alignment:
136 gaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttga 224  Q
    ||||||||||| |||||||||| ||||| |||||||| ||||||          |||||||||||||| ||||||||||||||||||||    
13235326 gaatctttgcactttagggtatattaatttatgacggaagggtt----------ttaatatgttgttagtgttatgatgtgaattttga 13235248  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 9887026 - 9886987
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacggg 173  Q
    ||||||||||||| |||||||||||||||| |||||||||    
9887026 gagaatctttgcactttagggtatcttaatatatgacggg 9886987  T

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Target: scaffold0061 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 16550 - 16680
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||||||||||||    
16550 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 16649  T
111 ggggatagattagatgtaagagagagaatct 141  Q
    | |||||||||||||||||| | ||||||||    
16650 gtggatagattagatgtaagggggagaatct 16680  T

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Target: scaffold0061; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 25608 - 25738
Alignment:
11 tgagatgaataagcattgatgttattctttagatgacaagtagtgactgttccaacttattatgtagatgacactcttaaggagtatcttaggccaacga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||   |||||||||| |||||||||||||||||||||||||||    
25608 tgagatgaataagcattgatgttattctttagatgacaagtagtgattgttccagcttacgttgtagatgacgctcttaaggagtatcttaggccaacga 25707  T
111 ggggatagattagatgtaagagagagaatct 141  Q
    | |||||||||||||||||| | ||||||||    
25708 gtggatagattagatgtaagggggagaatct 25738  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 29718105 - 29718198
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||| |||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
29718105 gagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaattttgatga 29718198  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 18985282 - 18985350
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgtt 202  Q
    |||||||||||||  |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||    
18985282 gagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgtt 18985350  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 26861220 - 26861307
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattt 221  Q
    |||| |||||||| ||||||||||||||||| |||| || |||||||| |||||||||||||| || || |||||||| ||| |||||    
26861220 gagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgttaattt 26861307  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 22521805 - 22521725
Alignment:
11 tgagatgaataagcattgatgttattctttagatgac-aagtagtgactgttccaacttattatgtagatgacactcttaa 90  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||  ||| |||||| |  |||||||| | |||||||    
22521805 tgagatgaataaccattgatgttattttttagatgacaaagtagtgatggttacaacttgtgttgtagatggcgctcttaa 22521725  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 21977209 - 21977117
Alignment:
135 agaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
21977209 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgatga 21977117  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 21999640 - 21999548
Alignment:
135 agaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
21999640 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgatga 21999548  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 10302824 - 10302744
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatg 214  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||    
10302824 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 22161835 - 22161743
Alignment:
135 agaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||    
22161835 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttgatga 22161743  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 19186887 - 19186796
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 225  Q
    ||||||||||||| |||||||||||||||| ||||| ||| |||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
19186887 gagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgat 19186796  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 10341161 - 10341068
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||| |||||| |||||||||||||||||||||  |||||| |||||||||||||||||| ||||||  |||||||||| ||||||||||||    
10341161 gagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaattttgatga 10341068  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 16357828 - 16357920
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||    | || |||||||||||| ||| |||||||    
16357828 gagaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaatgttgatga 16357920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 16928663 - 16928570
Alignment:
126 gtaagagagagaatctttgcaatttagggtatcttaatctatgacggga-gggttgtcttaaattttaatatgttgttactgttatgatgtgaattt 221  Q
    ||||| |||||||| ||| || ||||  |||||||||||||||| || | |||||||||||||||||||||||||||   ||||||| |||||||||    
16928663 gtaagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaatatgttgt---tgttatggtgtgaattt 16928570  T

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Target: scaffold0364 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 14668 - 14588
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatg 214  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||    
14668 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

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Target: scaffold0118 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 12060 - 11968
Alignment:
135 agaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatga 11968  T

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Target: scaffold0385 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 16250 - 16157
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||| | |||||||||||||||| ||||| |||||||| ||||||||||||||||  ||||| || |||||||||||||||||||||    
16250 gagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaattttgatga 16157  T

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Target: scaffold0290 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 11843 - 11936
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||| |||||||| || |||| |||||  |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||    
11843 gagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatga 11936  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 10454081 - 10454173
Alignment:
135 agaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||| | |||||||||||||||||||||| ||| |||||||| || ||||||||||||| || |||||||| |||||||||||||||    
10454081 agaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgatga 10454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 17861384 - 17861431
Alignment:
180 gtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||    
17861384 gtcttaaattttaaaatgttgttactgttatgacgtgaattttgatga 17861431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 15727862 - 15727766
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacggga------gggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||| || || |||||||||||||||||||||| ||||      ||||||| ||| |||||||||||||||   |||||||||||||||||| ||||    
15727862 gagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgt---tgttatgatgtgaatttttatga 15727766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 1683281 - 1683242
Alignment:
188 ttttaatatgttgttactgttatgatgtgaattttgatga 227  Q
    ||||||||||||||| | ||||||||||||||||||||||    
1683281 ttttaatatgttgttgcggttatgatgtgaattttgatga 1683242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 752 - 827
Alignment:
140 ctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaa-tatgttgttactgttatgatg 214  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||| |||||||||||    
752 ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 21496667 - 21496583
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaat 219  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||| ||||||||||| ||  |||||| |||||    
21496667 gagaatctttgcactttagggtatcttaatctatg-tgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaat 21496583  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 2509 - 2593
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttga 224  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||| |     |||||||||||||||| ||| |||||||||||||||||    
2509 gagaatctttgca-tttagggtatcttaatctatgatatgagggttat-----attttaatatgttgttgctggtatgatgtgaattttga 2593  T

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Target: scaffold0381 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 11518 - 11557
Alignment:
134 gagaatctttgcaatttagggtatcttaatctatgacggg 173  Q
    ||||||||||||| |||||||||||||||| |||||||||    
11518 gagaatctttgcactttagggtatcttaatatatgacggg 11557  T

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