View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16025_high_4 (Length: 359)
Name: NF16025_high_4
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 37044908 - 37045240
Alignment:
| Q |
13 |
aatatcaaaattgtttgaggcatataaaaagagtaagcaccatcgggatcagcatttccggccatttgaagggcatcggaattcgccaaatctgaattag |
112 |
Q |
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| T |
37044908 |
aatattaaaattgtttgaggcatataaaaagagtaagcaccatcgggatcagcatttccggccatttgaagggcatcggaattcgccaaatctgaattag |
37045007 |
T |
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| Q |
113 |
ccggtgtaacagcaagaataagacaagtaggaactttgatatatgacataatcatagttctgattcttgattcgatatctgacggttgatcgccaacggg |
212 |
Q |
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| T |
37045008 |
ccggtgtaacagcaagaataagacaagtaggaactttgatatatgacataatcatagttctgattctcgattcgatatctgacggttgatcgccaacggg |
37045107 |
T |
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| Q |
213 |
aaccttggtaataccagggagatccacaagcgtaatgtcaagaacattgggcgaaaaaatcttcaaacgaatttgtttatcagaaacacctttattccct |
312 |
Q |
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| T |
37045108 |
aaccttggtaataccagggagatccacaagcgtaatgtcaagaacattgggcgaaaaaatcttcaaacgaatttgtttatcagaaacacctttattccct |
37045207 |
T |
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| Q |
313 |
ccagcttccctatcagtctcagcctacaaaaac |
345 |
Q |
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| T |
37045208 |
ccagcttccctatcagtctcagcctacaaaaac |
37045240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 2026764 - 2026499
Alignment:
| Q |
73 |
gccatttgaagggcatcggaattcgccaaatctgaattagccggtgtaacagcaagaataagacaagtaggaactttgatatatgacataatcatagttc |
172 |
Q |
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| T |
2026764 |
gccatttgaagagcatctgaattagccaaatctgaatttgctggtgtgacagctagaataagacaggagggctctttaatatatgacatgatcattgttc |
2026665 |
T |
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| Q |
173 |
tgattcttgattcgatatctgacggttgatcgccaacgggaaccttggtaataccagggagatccacaagcgtaatgtcaagaacattgggcgaaaaaat |
272 |
Q |
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| T |
2026664 |
tgatccgggcttcaatatcagaaggctggtcaccaacaggaaccttcgtaatgcctgggaggtctacaagtgtcatgtccagaacatttggtgaaacaat |
2026565 |
T |
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| Q |
273 |
cttcaaacgaatttgtttatcagaaacacctttattccctccagcttccctatcagtctcagccta |
338 |
Q |
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| T |
2026564 |
cttcaaacgaatctgcctgtctgagacacccttgttgtcacctgcttccctatcagtttcagccta |
2026499 |
T |
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