View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16025_low_10 (Length: 264)

Name: NF16025_low_10
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16025_low_10
NF16025_low_10
[»] chr3 (25 HSPs)
chr3 (1-249)||(22458635-22458883)
chr3 (1-249)||(22481616-22481864)
chr3 (2-249)||(22468094-22468341)
chr3 (45-231)||(22630603-22630789)
chr3 (52-133)||(22615521-22615602)
chr3 (2-249)||(22358148-22358395)
chr3 (47-249)||(22442885-22443087)
chr3 (1-223)||(22179489-22179711)
chr3 (52-234)||(30989466-30989648)
chr3 (1-147)||(22436882-22437028)
chr3 (52-149)||(21937276-21937373)
chr3 (1-249)||(22635649-22635897)
chr3 (52-207)||(22028123-22028278)
chr3 (52-125)||(21945747-21945820)
chr3 (52-207)||(22187111-22187266)
chr3 (2-133)||(22431414-22431545)
chr3 (1-230)||(22052805-22053034)
chr3 (161-249)||(22368073-22368161)
chr3 (52-231)||(22115208-22115387)
chr3 (2-120)||(22368187-22368305)
chr3 (52-125)||(22034640-22034713)
chr3 (170-240)||(22353966-22354036)
chr3 (68-125)||(21930560-21930617)
chr3 (52-149)||(22648404-22648501)
chr3 (52-104)||(22657357-22657409)
[»] chr4 (1 HSPs)
chr4 (2-231)||(29610731-29610961)
[»] chr1 (2 HSPs)
chr1 (52-149)||(34980285-34980382)
chr1 (52-104)||(2305776-2305828)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 22458883 - 22458635
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458883 aggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 22458784  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 200  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458783 gaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 22458684  T
Q  201 aagtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22458683 aagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatga 22458635  T

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Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 22481864 - 22481616
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481864 aggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 22481765  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 200  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481764 gaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 22481665  T
Q  201 aagtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22481664 aagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatga 22481616  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 22468341 - 22468094
Alignment:
Q  2 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 101  Q
    |||||||| ||| | || ||||| ||||||||| |  | ||| |||||||||| ||||||||||||||||||||||  ||||||| | ||||||||||||    
T  22468341 ggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatag 22468242  T
Q  102 aaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatga 201  Q
    ||  |||| ||||||| || |||| | |  ||||| |||||||||| | | |||  || || ||| | ||||| ||| ||||| || |||| ||||||||    
T  22468241 aaaaattgttgagggaaattttgctcgatatttacaaacaacaaggggaagatcctcctcagagtctccatcagatggatcgaaagccattagttgatga 22468142  T
Q  202 agtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    |||||| ||||||||||| | ||||||||||||||||||  |||||||    
T  22468141 agtgagaaactacttgcaaggaaaaaggtatgttatagtgtttgatga 22468094  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 22630789 - 22630603
Alignment:
Q  45 tcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaaca 144  Q
    |||||||||||||||||||||||| ||||||||  ||||||| | ||||||||||||||  |||| |||||||||| |||| | || ||||| |||||||    
T  22630789 tcgttaaacactttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacattttgctcgagatttacaaacaaca 22630690  T
Q  145 aggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggta 231  Q
    |||   | |||  || |||||| | ||||||||| ||||| || |||| |||||||||||||| ||||||||||| | |||||||||    
T  22630689 agggaaagatcctcctcaaagtctccatcaaatggatcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggta 22630603  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 22615602 - 22615521
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttt 133  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||    
T  22615602 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt 22615521  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 22358395 - 22358148
Alignment:
Q  2 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 101  Q
    |||||||| ||||| |||||||| ||||||||| |    ||| |||| |||||||||||| ||| ||||||||| |  ||||||| | ||||||||| ||    
T  22358395 ggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtgtatggattacggtgtctcgaccatacaatacag 22358296  T
Q  102 aaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatga 201  Q
    ||  | || ||||||||||  ||| | |||||||| |||||||| |   |  ||  || || ||| | | ||||||| ||||| ||||||| ||||||||    
T  22358295 aaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtctccgtcaaatggatcgacagtcattagttgatga 22358196  T
Q  202 agtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    |||||| ||||||||||| ||||||||||||||| ||||  |||||||    
T  22358195 agtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatga 22358148  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 22443087 - 22442885
Alignment:
Q  47 gttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaag 146  Q
    ||||| |||||||| |||| | |||||||||  ||||||||||||| |||||| |||  | || ||||||||||  ||| | |||||||| ||||||||     
T  22443087 gttaagcactttgactgtcttttatggatcatggtgtctcaatcattcaatattgaaaaagtgttgagggacattatgctcgagttttacaaacaacaaa 22442988  T
Q  147 gagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagttcttga 246  Q
    |   |  ||  || || ||| | ||||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||  ||||    
T  22442987 ggaaagttcctcctcagagtctccatcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttga 22442888  T
Q  247 tga 249  Q
    |||    
T  22442887 tga 22442885  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22179489 - 22179711
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    ||||||||||||||| || ||||| |||||||||   ||  | ||| ||  |||||||||||||| ||||||||| | ||||||||||||||| |||       
T  22179489 aggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggattacagtgtctcaatcatataatgct 22179588  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag-caaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgat 199  Q
    ||||||||| |||| ||||||||||  ||| ||| | ||||| ||||||  |||||| ||| |  |||||  |||||||||||| |||||||||  | ||    
T  22179589 gaaggattgttgagagacatgttgctaaagatttgcaaacaaaaaggagtgaaatct-cccgagggtatttctcaaatgaatcgggagtcattgactaat 22179687  T
Q  200 gaagtgaggaactacttgcaggaa 223  Q
    |||||||| || ||||||||||||    
T  22179688 gaagtgagaaattacttgcaggaa 22179711  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 30989648 - 30989466
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagca 151  Q
    |||||||||||||| ||||||||||| ||||||||||||||| | | | ||||| ||| |||||||||||||||  ||||||||| ||||| | | || |    
T  30989648 acactttgattgtcgtgtatggatcatagtgtctcaatcatatactgttgaagggttgttgagggacatgttgctaaagttttacaaacaaaacgaagaa 30989549  T
Q  152 aatctcccccaaag-tattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgt 234  Q
     ||| | || || | ||||  ||||||| |||||| |||||||  |||||||||||| |||||||||| |  ||||||||||||    
T  30989548 gatc-ctcctaaggatatttttcaaatggatcgagggtcattgactgatgaagtgagaaactacttgcggttaaaaaggtatgt 30989466  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 22437028 - 22436882
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    ||||||||| ||||| || ||||| ||||||||  | | |||  || | ||||| ||||| |||||||||||||||| ||||||||||||||||| || |    
T  22437028 aggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaa 22436929  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaagg 147  Q
    |||  |||| |||||||||| |||| | || ||||| ||||||||||    
T  22436928 gaaaaattgttgagggacattttgctcgagatttacaaacaacaagg 22436882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 21937276 - 21937373
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag 149  Q
    |||||||||||||| ||||||||||| |||||||||| ||||  || | ||||| ||| ||| ||||||||||| |||||||||| ||||| ||||||    
T  21937276 acactttgattgtcgtgtatggatcacagtgtctcaagcatatgatgttgaagggttgttgaaggacatgttgctcaagttttacaaacaaaaaggag 21937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 22635897 - 22635649
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    ||||||||| ||||| |||||||| ||||||||| |    ||| |||| ||| |||||||||||| ||||||||| |  ||||||| | ||||||||| |    
T  22635897 aggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtgtatggattacggtgtctcgaccatacaataca 22635798  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 200  Q
    |||  | || || | |||||  ||| | |||||||| |||||||||| | |  ||  ||  | ||| | ||||||||| ||||| ||||||| |||||||    
T  22635797 gaaaaagtgttgcgagacattatgctcgagttttacaaacaacaaggggaagttcctcctgagagtctccatcaaatggatcgaaagtcattagttgatg 22635698  T
Q  201 aagtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    ||||||| ||| |||| || | ||||||||||||| ||||  |||||||    
T  22635697 aagtgagaaaccactttcaaggaaaaaggtatgttttagtgtttgatga 22635649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 22028123 - 22028278
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagca 151  Q
    |||||||||||||| ||||||||| | ||||||||||||||| |||   ||||||||| |||| ||||||||||  ||| ||| | ||||| ||||||      
T  22028123 acactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggagtg 22028222  T
Q  152 aatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatgaagtgag 207  Q
    |  || ||| |  |||||  |||||||||||| |||||||||  ||||||||||||    
T  22028223 acacttcccgagggtatttctcaaatgaatcgggagtcattgactgatgaagtgag 22028278  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 21945747 - 21945820
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgc 125  Q
    |||||||||||||| |||||||||||  ||||||||||||||  || | ||||||||| |||||||||||||||    
T  21945747 acactttgattgtcttgtatggatcactgtgtctcaatcatatgatgttgaaggattgttgagggacatgttgc 21945820  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 22187111 - 22187266
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagca 151  Q
    |||||||||||||| ||||||||| | ||||||||||||||| |||   ||||||||| |||| ||||||||||  ||| ||| | ||||| ||||||      
T  22187111 acactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggagag 22187210  T
Q  152 aatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatgaagtgag 207  Q
    |  |  ||| |  |||||  |||||||||||| |||||||||  ||||||||||||    
T  22187211 acacctcccgagggtatttctcaaatgaatcgggagtcattgactgatgaagtgag 22187266  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 22431545 - 22431414
Alignment:
Q  2 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 101  Q
    |||||||| |||||  | ||||| ||||||||| | |||| | || |||||||||||||||||| | ||||||||| |||||||||| ||||  ||||||    
T  22431545 ggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctcaaccatatgatatag 22431446  T
Q  102 aaggattgctgagggacatgttgcacaagttt 133  Q
    ||  |||| ||  | | |||||||||||||||    
T  22431445 aaaaattgttgcagaaaatgttgcacaagttt 22431414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 22052805 - 22053034
Alignment:
Q  1 aggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatata 100  Q
    ||||||||||||||| || ||||| |||||||||   ||  | ||| ||  ||| ||||||||||  |||||||| | |||||||||||||||  || |     
T  22052805 aggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattttgattgtcgggtatggattacagtgtctcaatcatatgatgtt 22052904  T
Q  101 gaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatg 200  Q
    ||||| ||| ||||||| |||||||  ||  ||||| ||||| ||||||  |||| ||  || |||||| |||||||| ||||||   |||||  |||||    
T  22052905 gaagggttgttgagggaaatgttgctaaaactttacaaacaaaaaggagacaatccccatcagagtatttatcaaatggatcgaggaacattgactgatg 22053004  T
Q  201 aagtgaggaactacttgcaggaaaaaaggt 230  Q
    ||||||| || ||| ||||| |||| ||||    
T  22053005 aagtgagaaattacctgcagaaaaagaggt 22053034  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 22368161 - 22368073
Alignment:
Q  161 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagttcttgatga 249  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||| ||| ||||  |||||||    
T  22368161 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatga 22368073  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 231
Target Start/End: Original strand, 22115208 - 22115387
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagca 151  Q
    |||||||||||||| ||||||||||| |||||||||||||||  |  | ||||| ||| ||||||| |||||||  ||  ||||| ||||| ||||||      
T  22115208 acactttgattgtcgtgtatggatcacagtgtctcaatcatatgaagttgaagggttgttgagggatatgttgccaaaaatttacaaacaagaaggagac 22115307  T
Q  152 aatctcccccaaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggta 231  Q
    ||||  ||    |||||| |||||||| ||||||  | |||   |||||||||||| || ||||||||| |||| |||||    
T  22115308 aatccaccttcgagtatttatcaaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggta 22115387  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 22368305 - 22368187
Alignment:
Q  2 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 101  Q
    |||||||| ||||| || ||||| ||||||||| |  | ||| ||||||||||||||||||||| | |||||||||  || |||| | |||| |||| ||    
T  22368305 ggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgtttatggatcacggtttctcgaccatataataaag 22368206  T
Q  102 aaggattgctgagggacat 120  Q
    ||  |||||||| ||||||    
T  22368205 aaaaattgctgaaggacat 22368187  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 22034640 - 22034713
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgc 125  Q
    ||||||||||| || ||||||||| | ||||||||||||||| |||   ||||||||| |||| ||||||||||    
T  22034640 acactttgattatcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22034713  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 22354036 - 22353966
Alignment:
Q  170 catcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagt 240  Q
    ||||||||| ||||| || |||| |||||||||||||| ||| ||||||| | ||||||||| ||| ||||    
T  22354036 catcaaatggatcgaaagccattagttgatgaagtgagaaacaacttgcaaggaaaaaggtacgttgtagt 22353966  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 21930560 - 21930617
Alignment:
Q  68 gtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgc 125  Q
    |||||||||| |||||||||||||||  || | ||||| ||| |||||||||||||||    
T  21930560 gtatggatcacagtgtctcaatcatatgatgttgaagggttgttgagggacatgttgc 21930617  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 22648501 - 22648404
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag 149  Q
    ||||||||| | || ||||||||||| |||||  ||||||||| ||| |||||| |||||||| | ||||||| |  || ||||| ||||| ||||||    
T  22648501 acactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagctttacaaacaaaaaggag 22648404  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 22657409 - 22657357
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaag 104  Q
    ||||||||| |||| ||| ||||||| |||||| ||||| |||||||||||||    
T  22657409 acactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaag 22657357  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 29610961 - 29610731
Alignment:
Q  2 ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag 101  Q
    |||||||| |||||  | ||||| |||||||||   |||||| ||||| ||||||||||   || ||||||||||| ||| || ||||||||||||||||    
T  29610961 ggaaaaactactctaactaagaaagtttttgac---aacaaggtcgttgaacactttgacaatcgtgtatggatcacagtatcacaatcatacaatatag 29610865  T
Q  102 aaggattgctgagggacatgttgcacaag-ttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga---gtcattggttg 197  Q
    |||||||||| |||| ||||||| | ||| |||||| ||||| | ||||   |||  || |||||||||  ||||||| | |||||   ||| || || |    
T  29610864 aaggattgctaaggggcatgttggagaagtttttacaaacaaaagggagatgatcctcctcaaagtatttctcaaatggagcgagagtcgtcgttagtcg 29610765  T
Q  198 atgaagtgaggaactacttgcaggaaaaaaggta 231  Q
    |||||||||| || ||||||||||| ||||||||    
T  29610764 atgaagtgagaaattacttgcaggagaaaaggta 29610731  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 34980285 - 34980382
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag 149  Q
    ||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| |||||||||   ||||||| | ||| ||||||||||| ||||||    
T  34980285 acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagctttacgaacaaaaaggag 34980382  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 2305828 - 2305776
Alignment:
Q  52 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaag 104  Q
    ||||||||| |||| ||||||||||| | |||| |||||||||||||||||||    
T  2305828 acactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaag 2305776  T

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