View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16025_low_11 (Length: 244)
Name: NF16025_low_11
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 22458907 - 22459119
Alignment:
| Q |
23 |
gacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattga |
122 |
Q |
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| T |
22458907 |
gacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattga |
22459006 |
T |
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| Q |
123 |
gcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22459007 |
gcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtat |
22459106 |
T |
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| Q |
223 |
cattcatctcact |
235 |
Q |
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||||||| ||||| |
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| T |
22459107 |
cattcatttcact |
22459119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 22481888 - 22482100
Alignment:
| Q |
23 |
gacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattga |
122 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22481888 |
gacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattga |
22481987 |
T |
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| Q |
123 |
gcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22481988 |
gcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccacttgtat |
22482087 |
T |
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| Q |
223 |
cattcatctcact |
235 |
Q |
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||||||| ||||| |
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| T |
22482088 |
cattcatttcact |
22482100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 22632306 - 22632398
Alignment:
| Q |
46 |
cctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttct |
138 |
Q |
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||||||||| ||||| ||||||| | | | |||| ||||||| || ||||||||| ||||||| ||| ||||| |||| | ||||||||||| |
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| T |
22632306 |
cctctaccagccaattaattagtttctctattggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtctcgaaggttct |
22632398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 29611001 - 29611088
Alignment:
| Q |
50 |
taccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttc |
137 |
Q |
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||||| ||||||||||| ||| | |||||| ||||||||||| |||| ||| ||||||| || ||||| ||||||||||||||||| |
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| T |
29611001 |
taccagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatccatgtaaaatggagcctttcgaaggttc |
29611088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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