View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16025_low_3 (Length: 382)
Name: NF16025_low_3
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 40966753 - 40966388
Alignment:
| Q |
7 |
cgtggaaagatcct-cattcttgaacttgagatgaaagttcaaaaataaaggatattatcctaattgaaatcaatttttcaagaattaacctagaaacac |
105 |
Q |
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| T |
40966753 |
cgtggaaagatccttcattcttaaacttgagatgaaagttcaaaaataaaggatattatcctaattgaaatcaatttttcaagaattaacctaaaaacac |
40966654 |
T |
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| Q |
106 |
aaatcatcaatgcttatacctagtccaaagtgtgacatgttagttccgtaacgattttaataggtcacctaacttcaactgacctagaatactctcctcc |
205 |
Q |
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| T |
40966653 |
aaatcatcaatgcttatacctagtccaaagtgtgacatgttagttccgtaacgattttaataggtcacctaacttcaactgacctagaatactctcctcc |
40966554 |
T |
|
| Q |
206 |
ctgaaccatgtgaaaggtggaatggcaatgtcaccaacacagtcatccttactagaatcggaagacagtgatgctacccacttatcggtacctatgagcc |
305 |
Q |
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| T |
40966553 |
ctgaaccatgtgaaaggtggaatggcaatgtcaccaacaaagtcatcctcactagaatcggaagacagggatgctacccacttatcggtacctatgagcc |
40966454 |
T |
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| Q |
306 |
ataatttcattcaagaagttacagnnnnnnnataaatttattatctcttcaattatatcaagaatt |
371 |
Q |
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| T |
40966453 |
ataatttcattcaagaagttacagtttttttataaatttattatctcttcaattatatcaagaatt |
40966388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 40966754 - 40966796
Alignment:
| Q |
69 |
attgaaatcaatttttcaagaattaacctagaaacacaaatca |
111 |
Q |
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| T |
40966754 |
attgaattcaaattttcaagaattaacctagaaacgcaaatca |
40966796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 27695319 - 27695363
Alignment:
| Q |
67 |
taattgaaatcaatttttcaagaattaacctagaaacacaaatca |
111 |
Q |
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| T |
27695319 |
taattgaattcaatatttcaagaattaacctaaaaatacaaatca |
27695363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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