View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16025_low_5 (Length: 354)

Name: NF16025_low_5
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16025_low_5
NF16025_low_5
[»] chr6 (16 HSPs)
chr6 (18-116)||(21455523-21455621)
chr6 (252-330)||(7214960-7215038)
chr6 (70-135)||(6937960-6938025)
chr6 (69-135)||(13534333-13534399)
chr6 (53-135)||(33331504-33331586)
chr6 (64-140)||(31784108-31784184)
chr6 (67-135)||(33328492-33328560)
chr6 (53-135)||(1329686-1329768)
chr6 (54-135)||(6337137-6337218)
chr6 (70-135)||(12429327-12429392)
chr6 (53-122)||(29641577-29641646)
chr6 (66-135)||(31556071-31556140)
chr6 (68-140)||(6799565-6799637)
chr6 (68-135)||(1221853-1221920)
chr6 (68-135)||(24447264-24447331)
chr6 (69-135)||(31070700-31070765)
[»] chr4 (34 HSPs)
chr4 (69-140)||(44293124-44293195)
chr4 (67-140)||(32655658-32655731)
chr4 (67-135)||(52180914-52180982)
chr4 (53-140)||(3387338-3387425)
chr4 (67-140)||(42053404-42053477)
chr4 (53-136)||(12185684-12185767)
chr4 (53-136)||(12187676-12187759)
chr4 (53-135)||(27586706-27586788)
chr4 (67-135)||(29149152-29149220)
chr4 (70-142)||(29994219-29994291)
chr4 (53-135)||(14576698-14576780)
chr4 (53-135)||(42755247-42755329)
chr4 (69-135)||(54979280-54979346)
chr4 (66-135)||(21075736-21075805)
chr4 (54-135)||(54932851-54932932)
chr4 (68-135)||(26340384-26340451)
chr4 (68-135)||(28234309-28234376)
chr4 (67-109)||(52595477-52595519)
chr4 (68-141)||(2721370-2721443)
chr4 (66-135)||(22829656-22829725)
chr4 (68-128)||(51807068-51807127)
chr4 (53-140)||(8065866-8065953)
chr4 (68-135)||(29406010-29406077)
chr4 (68-135)||(53140517-53140584)
chr4 (53-135)||(1758102-1758184)
chr4 (69-135)||(3098055-3098121)
chr4 (67-113)||(25938293-25938339)
chr4 (66-135)||(31786326-31786395)
chr4 (70-135)||(34459770-34459835)
chr4 (68-113)||(39804199-39804244)
chr4 (69-129)||(4757063-4757123)
chr4 (69-113)||(21245767-21245811)
chr4 (67-107)||(23147348-23147388)
chr4 (69-113)||(38000525-38000569)
[»] chr3 (28 HSPs)
chr3 (53-135)||(24987540-24987622)
chr3 (66-135)||(44792789-44792858)
chr3 (70-135)||(48079966-48080031)
chr3 (53-141)||(50481197-50481285)
chr3 (69-140)||(39352353-39352424)
chr3 (70-140)||(5041204-5041274)
chr3 (69-135)||(36691993-36692058)
chr3 (66-111)||(22845274-22845319)
chr3 (70-135)||(25467378-25467443)
chr3 (66-135)||(33099538-33099607)
chr3 (70-135)||(40563831-40563896)
chr3 (66-135)||(49359854-49359923)
chr3 (67-135)||(19618577-19618645)
chr3 (70-130)||(23299671-23299731)
chr3 (55-135)||(46819052-46819132)
chr3 (68-135)||(5908123-5908190)
chr3 (68-135)||(27064084-27064151)
chr3 (53-135)||(12905507-12905589)
chr3 (68-141)||(10085409-10085482)
chr3 (68-141)||(10192329-10192402)
chr3 (67-135)||(35203158-35203224)
chr3 (66-130)||(46584574-46584638)
chr3 (65-129)||(51055357-51055421)
chr3 (68-135)||(45079354-45079421)
chr3 (83-129)||(39144275-39144321)
chr3 (66-144)||(49374676-49374754)
chr3 (69-113)||(13735777-13735821)
chr3 (68-144)||(32995117-32995193)
[»] chr2 (17 HSPs)
chr2 (67-140)||(33867689-33867762)
chr2 (67-135)||(25424647-25424715)
chr2 (53-135)||(31440765-31440847)
chr2 (66-135)||(4480955-4481024)
chr2 (53-135)||(668100-668182)
chr2 (69-135)||(16711489-16711555)
chr2 (66-140)||(20936935-20937009)
chr2 (53-135)||(38620285-38620367)
chr2 (66-135)||(23231630-23231699)
chr2 (67-140)||(32422884-32422957)
chr2 (66-129)||(3329090-3329153)
chr2 (67-134)||(25667361-25667428)
chr2 (68-135)||(44928831-44928898)
chr2 (66-135)||(30241335-30241403)
chr2 (69-118)||(4592340-4592389)
chr2 (66-113)||(29155230-29155278)
chr2 (68-140)||(35048512-35048583)
[»] chr1 (29 HSPs)
chr1 (66-135)||(2501469-2501538)
chr1 (66-143)||(13312621-13312698)
chr1 (67-135)||(25815470-25815538)
chr1 (56-130)||(610617-610691)
chr1 (70-140)||(19996822-19996892)
chr1 (66-140)||(22580209-22580283)
chr1 (70-135)||(2978315-2978380)
chr1 (70-135)||(28220864-28220929)
chr1 (66-142)||(35978651-35978727)
chr1 (64-135)||(7842463-7842534)
chr1 (53-135)||(42069247-42069329)
chr1 (53-135)||(48964503-48964585)
chr1 (70-135)||(21260881-21260946)
chr1 (67-135)||(9222139-9222207)
chr1 (69-140)||(44328070-44328141)
chr1 (69-135)||(424465-424531)
chr1 (67-112)||(236281-236326)
chr1 (70-135)||(19506279-19506344)
chr1 (67-135)||(8981702-8981770)
chr1 (68-135)||(4893437-4893504)
chr1 (68-135)||(29184983-29185050)
chr1 (68-135)||(33363040-33363107)
chr1 (70-113)||(38491337-38491380)
chr1 (66-112)||(43634781-43634827)
chr1 (70-135)||(2975391-2975456)
chr1 (66-135)||(10786113-10786182)
chr1 (98-135)||(25058997-25059034)
chr1 (66-135)||(48796433-48796502)
chr1 (67-135)||(40094653-40094721)
[»] chr7 (22 HSPs)
chr7 (67-142)||(16567463-16567538)
chr7 (67-142)||(16598124-16598199)
chr7 (66-135)||(31454801-31454870)
chr7 (70-130)||(30738774-30738834)
chr7 (67-135)||(46181116-46181184)
chr7 (66-140)||(5023332-5023406)
chr7 (66-130)||(3551675-3551739)
chr7 (64-135)||(25309653-25309724)
chr7 (64-135)||(46782991-46783062)
chr7 (53-135)||(19804941-19805023)
chr7 (53-135)||(27398483-27398565)
chr7 (53-135)||(39414481-39414563)
chr7 (70-135)||(9477562-9477627)
chr7 (70-135)||(43702548-43702613)
chr7 (67-141)||(21916239-21916313)
chr7 (70-140)||(43224222-43224292)
chr7 (66-135)||(9355304-9355373)
chr7 (68-135)||(17172363-17172430)
chr7 (66-113)||(35092855-35092902)
chr7 (68-130)||(2959855-2959917)
chr7 (66-140)||(10066401-10066475)
chr7 (66-135)||(1876185-1876254)
[»] chr5 (18 HSPs)
chr5 (53-135)||(14088166-14088248)
chr5 (66-135)||(41616481-41616550)
chr5 (53-135)||(15719310-15719392)
chr5 (70-135)||(14087561-14087626)
chr5 (76-141)||(24489691-24489756)
chr5 (67-135)||(30684-30752)
chr5 (53-135)||(6224961-6225043)
chr5 (53-135)||(14645213-14645294)
chr5 (66-135)||(25828508-25828577)
chr5 (70-135)||(31149841-31149906)
chr5 (68-135)||(32302300-32302367)
chr5 (70-124)||(22632390-22632444)
chr5 (70-140)||(29455683-29455753)
chr5 (68-140)||(19254631-19254703)
chr5 (68-135)||(34718927-34718994)
chr5 (68-135)||(41692611-41692678)
chr5 (70-135)||(7977928-7977993)
chr5 (66-135)||(15674120-15674189)
[»] chr8 (13 HSPs)
chr8 (68-135)||(37226917-37226984)
chr8 (53-135)||(24789409-24789491)
chr8 (70-135)||(2472427-2472492)
chr8 (69-142)||(30801137-30801210)
chr8 (53-144)||(3616994-3617085)
chr8 (77-135)||(1667165-1667223)
chr8 (70-135)||(24891564-24891630)
chr8 (66-135)||(26561370-26561438)
chr8 (66-130)||(7057507-7057571)
chr8 (77-135)||(6109519-6109577)
chr8 (66-135)||(29528327-29528396)
chr8 (70-135)||(43239079-43239144)
chr8 (53-129)||(19643643-19643719)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-135)||(240595-240677)
[»] scaffold0312 (1 HSPs)
scaffold0312 (69-135)||(6018-6084)
[»] scaffold0230 (1 HSPs)
scaffold0230 (68-135)||(26532-26599)
[»] scaffold0056 (1 HSPs)
scaffold0056 (81-135)||(72744-72798)
[»] scaffold0160 (1 HSPs)
scaffold0160 (66-135)||(26268-26337)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 21455523 - 21455621
Alignment:
Q  18 ccatgtatcaaattcatcacaagggtacgggcacaggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactca 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21455523 ccatgtatcaaattcatcacaagggtacgggcacgggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactca 21455621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 7214960 - 7215038
Alignment:
Q  252 ttatatctacaataaataaataaatacttttgatttataagtttagttgtatttgtaactatcagagacattatgtgca 330  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||  |||||||| ||||||||| ||||||||||    
T  7214960 ttatatctaaaataaataaataaatacttttgattcataagtgtagttcaatttgtaattatcagagatattatgtgca 7215038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 6938025 - 6937960
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  6938025 tttttacaaatgcgggtatggggatgggcattgtagtaccctacccatagggtacccattgccatc 6937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 13534333 - 13534399
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  13534333 ttttttataaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 13534399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 33331586 - 33331504
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| |||||||||||||| || ||||||||||||||||||  ||| |||||||||||| ||||    
T  33331586 ggcacgggtacgggtattttttataaatgcgggtatggagacggacattgtagtaccctatccattgggtacccattgccatc 33331504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 31784108 - 31784184
Alignment:
Q  64 gtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||||| ||||||||||||| ||| || |||||||||||||||| ||| | |||||||||| |||| ||||    
T  31784108 gtgtattttttataaatgcgggtatgaggacgggcattgtagtaccctacccatcgagtacccattgacatccctac 31784184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 33328560 - 33328492
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||  ||| |||||||||||| ||||    
T  33328560 tattttttataaatgcgggtatggagacggacattgtagtaccctatccattgggtacccattgccatc 33328492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 1329686 - 1329768
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||||| ||||| ||||||||||| | ||| || ||||||||| ||||    
T  1329686 ggcacgggtacgagtattttttataaatgcgggtatggggacggacactgtagtaccctgcccattggatacccattgccatc 1329768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 6337218 - 6337137
Alignment:
Q  54 gcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| |||  ||||| ||||||||| ||||||||||| || || | ||||||||||| ||| |||||||||||| ||||    
T  6337218 gcacgggtatggatatttcttacaaatgtgggtatggggatgggcactatagtaccctacccattgggtacccattgccatc 6337137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 12429392 - 12429327
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||| ||||| ||| || || ||||||||| |||||||||| |||||||||||| ||||    
T  12429392 tttttacaaatacgggtttggagatgggcattgtagtcccctactcattgggtacccattgccatc 12429327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 29641577 - 29641646
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggt 122  Q
    |||||||| ||| |||||||||| |||||||| |||||||| ||||  ||||||||||||| ||| ||||    
T  29641577 ggcacgggtatgggtattttttataaatgcggatatggggacggacgctgtagtaccctacccattgggt 29641646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 31556071 - 31556140
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| || | ||||||||||  || | ||| |||||||||||||| ||||||||||||||    
T  31556071 gtattttttacaaaagcagatatggggaagagcactatagcaccctactcataggatacccattgtcatc 31556140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 6799565 - 6799637
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||||| ||||||||||||| ||| | | ||||||| ||| ||| |||||||||||| |||| ||||    
T  6799565 attttttacaaacgcgggtatggggatggatactatagtaccttacccattgggtacccattgccatccctac 6799637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 1221853 - 1221920
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  1221853 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 1221920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 24447264 - 24447331
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  24447264 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 24447331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 31070765 - 31070700
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||||||||||  | || || ||||||||||||||||| |||||||||||| ||||    
T  31070765 ttttttataaatgcgggtatgga-acgggcactgtagtaccctactcattgggtacccattgccatc 31070700  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 44293124 - 44293195
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  44293124 ttttttacaaacgcgcgtatggggaagggcattgtagtaccctactcatagggtgcccattgtcatccctac 44293195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 32655658 - 32655731
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||    
T  32655658 tattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatccctac 32655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 52180914 - 52180982
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  52180914 tattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatc 52180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 3387338 - 3387425
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||| | | |||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| |||| ||||    
T  3387338 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctac 3387425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 42053404 - 42053477
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| |||| ||||    
T  42053404 tattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctac 42053477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 12185767 - 12185684
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcg 136  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||| |||||    
T  12185767 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattgggtacccattgccatcg 12185684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 12187759 - 12187676
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcg 136  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||| |||||    
T  12187759 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattgggtacccattgccatcg 12187676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 27586706 - 27586788
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | ||||||||||||||||  ||||  ||||||| |||||||||||||||| |||||| ||||||||||||||    
T  27586706 ggcacgggtaagggtattttttacaaatgtaggtacagggaagggcattgtagtaccctacccataggttacccattgtcatc 27586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 29149152 - 29149220
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||  ||| |||||||||||| ||||    
T  29149152 tattttttataaatgcgggtatggggacgggcattgtagtaccctatccattgggtacccattgccatc 29149220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 29994291 - 29994219
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacat 142  Q
    |||||||||||| ||||||||||| || |||||||||||||||| ||| | |||| |||||||||| ||||||    
T  29994291 tttttacaaatgtgggtatggggatgggcattgtagtaccctacccattgagtactcattgtcatccctacat 29994219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 14576780 - 14576698
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || |||| |||||||| ||| |||||||||||| ||||    
T  14576780 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattgggtacccattgccatc 14576698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 42755329 - 42755247
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||| ||||||||||| || || ||||||||||||| ||| |||||||||||| ||||    
T  42755329 ggcacgggtacgggtattttttataaatgagggtatggggacgggcagtgtagtaccctacccattgggtacccattgccatc 42755247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 54979280 - 54979346
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| |||| |||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  54979280 ttttttataaatacgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 54979346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 21075805 - 21075736
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||||||||||||||| || || ||||||||||||  ||| |||||||||||| ||||    
T  21075805 gtattttttataaatgcgggtatggggacgggcactgtagtaccctatccattgggtacccattgccatc 21075736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 54932851 - 54932932
Alignment:
Q  54 gcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||| |||||||||| |||||||| |||||||| || || ||| ||||||||| ||| || ||||||||||||||    
T  54932851 gcacgggtatgagtattttttataaatgcggatatggggacgggcactgttgtaccctacccattggatacccattgtcatc 54932932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 26340384 - 26340451
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||||| ||| | | ||||||||||| ||| |||||||||||| ||||    
T  26340384 attttttacaaacgcgggtatggggatggatactatagtaccctacccattgggtacccattgccatc 26340451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 28234309 - 28234376
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  28234309 attttttacaaatgcgggtatggggatggatactatagtaccctatccattgggtacccattgccatc 28234376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 52595519 - 52595477
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtacc 109  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  52595519 tattttttataaatgcgggtatggggacggacattgtagtacc 52595477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 2721370 - 2721443
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    |||||||||||| |||||||||| || ||| | ||||||||||||  ||| |||||||||||| |||| |||||    
T  2721370 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccctaca 2721443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 22829725 - 22829656
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||||| ||  | | ||||||||||| ||| |||||||||||| ||||    
T  22829725 gtattttttacaaacgcgggtatggggatgggtactatagtaccctacccattgggtacccattgccatc 22829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 51807068 - 51807127
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccat 128  Q
    |||||||||||||||||||||| ||||||  ||| ||||||||||| ||| ||||||||||    
T  51807068 attttttacaaatgcgggtatgaggaagggtattatagtaccctac-cattgggtacccat 51807127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 8065953 - 8065866
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||| | | |||||||||| |||||| | |||||||| || || ||||||||||||| ||| || ||||||||| |||| ||||    
T  8065953 ggcacgggtacgagtattttttataaatgcagatatggggatgggcactgtagtaccctacccattggatacccattgccatccctac 8065866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 29406010 - 29406077
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||  | | ||||||||||  ||| |||||||||||||||||    
T  29406010 attttttacaaatgagggtatggggatgggtactatagtaccctatccattgggtacccattgtcatc 29406077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 53140584 - 53140517
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  53140584 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 53140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 1758102 - 1758184
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| ||| | |||| ||||||||| |||||||| || || || | ||||||||||| ||| || ||||||||||||||    
T  1758102 ggcacgggtatgggcatttcttacaaatgtgggtatggagatgggcactatagtaccctacccattggatacccattgtcatc 1758184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 3098055 - 3098121
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||| ||||||||| || |||||||||||||||  |||  ||||||||||| ||||    
T  3098055 ttttttataaatgcgagtatggggacgggcattgtagtaccctatccattaggtacccattgccatc 3098121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 25938339 - 25938293
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    ||||||||| |||| |||||||||| | |||||||||||||||||||    
T  25938339 tattttttataaatacgggtatgggaacggacattgtagtaccctac 25938293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 31786395 - 31786326
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||| ||| | | | | ||||||||||| ||| || ||||||||||||||    
T  31786395 gtattttttacaaacgcgggtatgaggatgaatactatagtaccctacccattggatacccattgtcatc 31786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 34459770 - 34459835
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||| ||| || |||| |||||||||||  || |||||||||||| ||||    
T  34459770 tttttaaaaatgcgggtatgaggatgggcattatagtaccctacctattgggtacccattgccatc 34459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 39804244 - 39804199
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    |||||||||||||||||||||||||| ||| | | |||||||||||    
T  39804244 attttttacaaatgcgggtatggggatggatactatagtaccctac 39804199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 4757123 - 4757063
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccatt 129  Q
    ||||||| ||||||||||||| | | ||||| ||||||||||||  ||| |||||||||||    
T  4757123 ttttttataaatgcgggtatgagaatggacactgtagtaccctatccattgggtacccatt 4757063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 21245811 - 21245767
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    ||||||| |||||| |||||||||| ||||| |||||||||||||    
T  21245811 ttttttataaatgcaggtatggggatggacactgtagtaccctac 21245767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 23147388 - 23147348
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagta 107  Q
    ||||||||| ||||||||||||||||| || ||||||||||    
T  23147388 tattttttataaatgcgggtatggggacgggcattgtagta 23147348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 38000569 - 38000525
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    ||||||| |||||||||||||| || ||||| |||||||||||||    
T  38000569 ttttttataaatgcgggtatggagacggacactgtagtaccctac 38000525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 24987540 - 24987622
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| | |||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  24987540 ggcacgggcacgggtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 24987622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 44792789 - 44792858
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  44792789 gtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 44792858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 48080031 - 48079966
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  48080031 tttttacaaatgtgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 48079966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 50481197 - 50481285
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    |||||||| | | |||||||||| ||||||||| ||||||| || || ||||||||||||| ||| |||||||||||| |||| |||||    
T  50481197 ggcacgggtacgggtattttttataaatgcggggatggggacgggcactgtagtaccctacccattgggtacccattgccatccctaca 50481285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 39352424 - 39352353
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||| ||||||||||||||||| || || ||||||||||||| |||  |||||||||||||||| ||||    
T  39352424 ttttttataaatgcgggtatggggacgggcactgtagtaccctacccattaggtacccattgtcatccctac 39352353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 5041204 - 5041274
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||| ||||||||||||||||| || |||||||||||||||| ||| ||||| |||||| |||| ||||    
T  5041204 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtatccattgccatccctac 5041274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 36692058 - 36691993
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||| ||| ||||| |||||||||||    
T  36692058 ttttttataaatgcgggcatggggaaggacactgtagtaccctacccattgggta-ccattgtcatc 36691993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 22845274 - 22845319
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccct 111  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  22845274 gtattttttacaaatacgggtatggggaagggcattgtagtaccct 22845319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 25467443 - 25467378
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||||||| |||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  25467443 tttttaaaaatgcggatatggggatgggcattgtagtaccctacccattgggtacccattgccatc 25467378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 33099607 - 33099538
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||| ||| |||||| ||||| || ||||||||||||||||||||| |||||||| ||||    
T  33099607 gtatttattacaaacgcgagtatggagaagggcactgtagtaccctactcatagggcacccattgccatc 33099538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 40563896 - 40563831
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| ||| ||||||| |||| ||||    
T  40563896 tttttacaaatgcgggtatggggatgggtattgtagtaccctacacattgggtacctattgccatc 40563831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 49359923 - 49359854
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| |||||||||||||||||  | || ||||||||||||| ||| |||||||||||| ||||    
T  49359923 gtattttttataaatgcgggtatggggacaggcagtgtagtaccctacccattgggtacccattgccatc 49359854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 19618645 - 19618577
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||| | ||| || ||||||||| ||||    
T  19618645 tattttttataaatgcgggtatggggacggacaatgtagtaccctgcccattggatacccattgccatc 19618577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 23299671 - 23299731
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    |||||| ||||||||||||||||| || |||||||||||||||| |||  |||||||||||    
T  23299671 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccatttggtacccattg 23299731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 46819132 - 46819052
Alignment:
Q  55 cacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||||||||| ||||||||| || |||||||| || |||| ||||||||||  ||| |||||||||||| ||||    
T  46819132 cacgggtatgtgtatttcttacaaatgtggatatggggatgggcattatagtaccctatccattgggtacccattgccatc 46819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 5908190 - 5908123
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||||| ||| | | ||||||||||| ||| |||||||||||| ||||    
T  5908190 attttttacaaacgcgggtatggggatggatactatagtaccctacccattgggtacccattgccatc 5908123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 27064151 - 27064084
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||||||||  | | | ||||||||| ||| |||||||||||||||||    
T  27064151 attttttacaaacgcgggtatggggaagggtactattgtaccctacccattgggtacccattgtcatc 27064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 12905589 - 12905507
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | ||| |||||||||||| ||||||||||| ||||||||||||||| |||  ||  ||||||||||| ||||    
T  12905589 ggcacgggtacgagtaatttttacaaatgtgggtatggggatggacattgtagtaccatacctattcggtacccattgccatc 12905507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 10085409 - 10085482
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    |||||||||||| |||||||||| || ||| | ||||||||||||  ||| |||||||||||| |||| |||||    
T  10085409 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccctaca 10085482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 10192329 - 10192402
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    |||||||||||| |||||||||| || ||| | ||||||||||||  ||| |||||||||||| |||| |||||    
T  10192329 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccctaca 10192402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 35203224 - 35203158
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||| | |||||||| ||||||||||||  ||||||||  |||||||||||| |||||||    
T  35203224 tattttttacaaacgtgggtatggagaaggacattgt--taccctacctatagggtacccactgtcatc 35203158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 46584638 - 46584574
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    ||||| ||| |||| ||||||||| |||||  || ||||||||||||||||| ||||||||||||    
T  46584638 gtattattttcaaacgcgggtatgaggaagagcactgtagtaccctactcattgggtacccattg 46584574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 51055421 - 51055357
Alignment:
Q  65 tgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccatt 129  Q
    |||||||||||||||||| || |||| ||||| |||||||||||||||   ||||||||| ||||    
T  51055421 tgtattttttacaaatgcaggcatggagaagggcattgtagtaccctatctatagggtactcatt 51055357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 45079354 - 45079421
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||  | | ||||||||||  ||| |||||||||||||||||    
T  45079354 attttttacaaatgagggtatggggatgggtactatagtaccctatccattgggtacccattgtcatc 45079421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 39144275 - 39144321
Alignment:
Q  83 gggtatggggaaggacattgtagtaccctactcatagggtacccatt 129  Q
    |||||||||||||| ||| |||||||||||| | |||||||||||||    
T  39144275 gggtatggggaagggcatcgtagtaccctacccttagggtacccatt 39144321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 49374754 - 49374676
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacatgt 144  Q
    ||||||||||||||  |||||||||||| ||| | | ||||| ||||| ||| |||||||||||| |||| ||| ||||    
T  49374754 gtattttttacaaacacgggtatggggatggatactatagtatcctacccattgggtacccattgccatccctaaatgt 49374676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 13735777 - 13735821
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    ||||||| ||||||||||||||||| || || |||||||||||||    
T  13735777 ttttttataaatgcgggtatggggacgggcactgtagtaccctac 13735821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 32995193 - 32995117
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacatgt 144  Q
    |||||||||||| || |||||||||| ||| | | |||||||||||  || |||||||||||| |||| ||| ||||    
T  32995193 attttttacaaacgcaggtatggggatggatactatagtaccctacctattgggtacccattgccatccctatatgt 32995117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 33867689 - 33867762
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||    
T  33867689 tattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatccctac 33867762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 25424715 - 25424647
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  25424715 tattttttataaatgcgggtatggggacggacattgtagtaccctacccattgggtacccattgccatc 25424647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 31440765 - 31440847
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| |||||||||||| |||| || |||||||||||||||| ||| |||||||||||| ||||    
T  31440765 ggcacgggtacgggtattttttataaatgcgggtattgggacgggcattgtagtaccctacccattgggtacccattgccatc 31440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 4481024 - 4480955
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||||||||||||||| || |||||||||||| ||| ||| |||||||||||| ||||    
T  4481024 gtattttttataaatgcgggtatggggacgggcattgtagtaccttacccattgggtacccattgccatc 4480955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 668100 - 668182
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | ||| |||||||||||| ||||||| ||| || |||||||||||||||| ||| |||||||||||| ||||    
T  668100 ggcacgggtacgagtaatttttacaaatgtgggtatgaggatgggcattgtagtaccctacccattgggtacccattgccatc 668182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 16711489 - 16711555
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||| |||| |||| |||||||||||    
T  16711489 ttttttacaaacgcgggtagggggaagggcactgtagtaccctacccataaggtatccattgtcatc 16711555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 20937009 - 20936935
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||||||||| |||||||| ||| || || ||||||||||||| |||||||| ||||||| |||| ||||    
T  20937009 gtattttttacaaatacgggtatgaggatgggcactgtagtaccctacccatagggtgcccattgccatccctac 20936935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 38620367 - 38620285
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| |||||| |||||||||| || |||||||||||||||| ||| | |||||||||| ||||    
T  38620367 ggcacgggtacgggtattttttataaatgcaggtatggggatgggcattgtagtaccctacccattgagtacccattgccatc 38620285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 23231699 - 23231630
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||  ||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  23231699 gtattttttataaatttgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 23231630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 32422884 - 32422957
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||| ||||||||||||||||| || |||||||||||| ||  ||| |||||||||||| |||| ||||    
T  32422884 tattttttataaatgcgggtatggggacgggcattgtagtaccgtatccattgggtacccattgccatccctac 32422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 3329153 - 3329090
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccatt 129  Q
    |||||||||| ||||||||||||||||| || || ||||||||||||| ||| || ||||||||    
T  3329153 gtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattggatacccatt 3329090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 25667428 - 25667361
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcat 134  Q
    ||||||||||||| ||||||| ||||||||  ||| ||||||||||| ||| || |||||||||||||    
T  25667428 tattttttacaaacgcgggtacggggaagggtattatagtaccctacccattggatacccattgtcat 25667361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 44928831 - 44928898
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||| |  || ||| |||||||||||||    
T  44928831 attttttacaaacgcgggtacggggaaggacattatagtaccctgcctattggggacccattgtcatc 44928898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 30241403 - 30241335
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||||||||||||| | || || ||||||||||||||||| || ||||||||| ||||    
T  30241403 gtattttttataaatgcgggtatggg-acgggcactgtagtaccctactcattggatacccattgccatc 30241335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 4592340 - 4592389
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcata 118  Q
    |||||||||||||| |||||| |||||| || ||||||||||||| ||||    
T  4592340 ttttttacaaatgctggtatgaggaagggcactgtagtaccctacccata 4592389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 29155278 - 29155230
Alignment:
Q  66 gtattttttacaaatgcgggtat-ggggaaggacattgtagtaccctac 113  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||||||||    
T  29155278 gtatattttacaaatgcgggtatgggggaagggcattgcagtaccctac 29155230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 35048583 - 35048512
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||||| ||||||||||||| ||| | | ||||||||||| ||| ||||| |||||| |||| ||||    
T  35048583 attttttacaaacgcgggtatggggatggatactatagtaccctac-cattgggtatccattgccatccctac 35048512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 2501538 - 2501469
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||| |||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  2501538 gtattttttacaaacgcgtgtatggggaagggcactgtagtaccctacccatagggtacccattgtcatc 2501469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 13312698 - 13312621
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacatg 143  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| |||| |||||||    
T  13312698 gtattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctacatg 13312621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 25815470 - 25815538
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  25815470 tattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 25815538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 610691 - 610617
Alignment:
Q  56 acgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    ||||| ||| |||||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  610691 acgggtatgagtatttttaacaaatgcggatatggggaaagacactgtagtaccctacccatagggtatccattg 610617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 19996822 - 19996892
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  19996822 tttttacaaatgcggatatggggatgggcattgtagtaccctacccattgggcacccattgtcatccctac 19996892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 22580209 - 22580283
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||| |||||||||||||| ||||    
T  22580209 gtattttttacaaacacgggtattgggacgggcattgtagtaccctacccataggatacccattgtcatccctac 22580283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 2978380 - 2978315
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  2978380 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 2978315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 28220929 - 28220864
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  28220929 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 28220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 35978651 - 35978727
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacat 142  Q
    |||||||||| ||||| ||||||||||| || || ||||||||||||| ||| |||||||||||| |||| ||||||    
T  35978651 gtattttttataaatgtgggtatggggacgggcactgtagtaccctacccattgggtacccattgccatccctacat 35978727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 7842534 - 7842463
Alignment:
Q  64 gtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||| |||||||| ||||||||||||||| || |||||||||||||||  ||| |||||||||||| ||||    
T  7842534 gtgtaatttttacagatgcgggtatggggatgggcattgtagtaccctatccattgggtacccattgccatc 7842463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 42069247 - 42069329
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || ||||||||||||| ||| ||| |||||||| ||||    
T  42069247 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattgggcacccattgccatc 42069329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 48964503 - 48964585
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||| ||||| | |||||||||| |||||||||||||||||  | || ||||||||||||| ||| |||||||||||| ||||    
T  48964503 ggcaagggcacgggtattttttataaatgcgggtatggggacaggcactgtagtaccctacccattgggtacccattgccatc 48964585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 21260881 - 21260946
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||||||| || |||||||||||||||| |||  ||||||||||| ||||    
T  21260881 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattaggtacccattgccatc 21260946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 9222207 - 9222139
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||  ||||||||||||||||| || |||||||||||||||| ||| || ||||||||| ||||    
T  9222207 tattttttgtaaatgcgggtatggggacgggcattgtagtaccctacccattggatacccattgccatc 9222139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 44328070 - 44328141
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    ||||||| |||| |||||||||||| || || |||||||| |||| ||| ||||||||||||||||| ||||    
T  44328070 ttttttataaatacgggtatggggacggtcactgtagtactctacccattgggtacccattgtcatccctac 44328141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 424531 - 424465
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||||  |||||||||| |||||||||||||||  ||| |||||||||||| ||||    
T  424531 ttttttataaatgcggacatggggaagggcattgtagtaccctatccattgggtacccattgccatc 424465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 236326 - 236281
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtacccta 112  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  236326 tattttttacaaatgcgggtatgatgaagggcattgtagtacccta 236281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 19506344 - 19506279
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||| |||||||||||| ||||||| ||||||||||| ||| || ||||||||| ||||    
T  19506344 tttttaaaaattcgggtatggggatggacattatagtaccctacccattggatacccattgccatc 19506279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 8981702 - 8981770
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||| ||||||||||| | ||| | | ||||||||||| ||| || ||||||||||||||    
T  8981702 tattttttacaaacgcgggtatgggaatggatactatagtaccctacccattggatacccattgtcatc 8981770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 4893437 - 4893504
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  4893437 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 4893504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 29185050 - 29184983
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  29185050 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 29184983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 33363040 - 33363107
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  33363040 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 33363107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 38491380 - 38491337
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||    
T  38491380 tttttacaaatgcgggaatgaggatggacattgtagtaccctac 38491337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 43634781 - 43634827
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtacccta 112  Q
    |||||||||| |||||||||||||| || |||||||||| |||||||    
T  43634781 gtattttttataaatgcgggtatggagacggacattgtaatacccta 43634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 2975391 - 2975456
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||||||||||||   | |||||||||||||| |||  ||| |||||||||||||||||    
T  2975391 tttttaaaaatgcgggtatgaaaatggacattgtagtactctatccattgggtacccattgtcatc 2975456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 10786182 - 10786113
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| |||||  |||| | |||||| |||||||||||||||  ||||| |||||||||| ||||    
T  10786182 gtattttttataaatgttggtacgaggaagggcattgtagtaccctatccatagagtacccattgccatc 10786113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 25059034 - 25058997
Alignment:
Q  98 cattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  25059034 cattgtagtaccctacacattgggtacccattgtcatc 25058997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 48796502 - 48796433
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| | ||  | | ||||||||| | ||| |||||||||||||||||    
T  48796502 gtattttttacaaacgcgggtatgggaatgggtactatagtaccctgcccattgggtacccattgtcatc 48796433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 40094653 - 40094721
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||| ||||||||||||| ||| | | | ||||||||| ||| || ||||||||| ||||    
T  40094653 tattttttacaaacgcgggtatggggatggatactatggtaccctacccattggatacccattgccatc 40094721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 16567538 - 16567463
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacat 142  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| |||| ||||||    
T  16567538 tattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctacat 16567463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 16598124 - 16598199
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacat 142  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| |||| ||||||    
T  16598124 tattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatccctacat 16598199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 31454870 - 31454801
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||    
T  31454870 gtattttttataaatgcggatatggggacggacattgtagtaccctactcattggatacccattgccatc 31454801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 30738774 - 30738834
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    |||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||    
T  30738774 tttttacaaatgcgggtatgagaaagggcactgtagtaccctactcatagggtacccattg 30738834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 46181184 - 46181116
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  46181184 tattttttataaatgcgggtatggggacgggcattgtagtaccctacccattgggtacccattgccatc 46181116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 5023332 - 5023406
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||| |||| ||||    
T  5023332 gtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattgggtacccattgccatccctac 5023406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 3551675 - 3551739
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    ||||||||||||||| |||||||| ||||||  | |||||||||||||| |||||||||||||||    
T  3551675 gtattttttacaaatacgggtatgaggaagggtactgtagtaccctacttatagggtacccattg 3551739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 25309653 - 25309724
Alignment:
Q  64 gtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||| |||||||||| ||| | || ||||||||| ||| |||||||||||||||| ||||    
T  25309653 gtgtattttttacaaacgcgggtatggagaatggcactgtagtaccttacccatagggtacccattgccatc 25309724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 46783062 - 46782991
Alignment:
Q  64 gtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||||||||| || || ||||||||||||  ||| |||||||||||| ||||    
T  46783062 gtgtattttttataaatgcgggtatggggacgggcactgtagtaccctaaccattgggtacccattgccatc 46782991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19805023 - 19804941
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||| ||| || || ||||||||||||| ||| |||||||||||| ||||    
T  19805023 ggcacgggtacgggtattttttataaatgcgggtatgaggacgggcactgtagtaccctacccattgggtacccattgccatc 19804941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 27398565 - 27398483
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| ||| |||||||||| |||| |||||||||||| || |||||||||||||||  ||| ||| |||||||| ||||    
T  27398565 ggcacgggtatgggtattttttataaatacgggtatggggacgggcattgtagtaccctatccattgggcacccattgccatc 27398483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 39414563 - 39414481
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||| | || |||||||||||||||  ||| |||||||||||| ||||    
T  39414563 ggcacgggtacgggtattttttataaatgcgggtatgggaacgggcattgtagtaccctatccattgggtacccattgccatc 39414481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 9477627 - 9477562
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||| |  ||||||||||||||||  || |||||||||||||||||    
T  9477627 tttttacaaatgagggtatggggatgagcattgtagtaccctaccgattgggtacccattgtcatc 9477562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 43702548 - 43702613
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||| || ||||||||||||||||  || |||||||||||| ||||    
T  43702548 tttttacaaatgtgggtatggggatgggcattgtagtaccctacctattgggtacccattgccatc 43702613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 21916313 - 21916239
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    ||||||||| |||||||| |||||||||||  ||||| ||||||||| |||||| || |||||| |||| |||||    
T  21916313 tattttttataaatgcggatatggggaagggaattgttgtaccctacccataggatatccattgccatccctaca 21916239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 43224292 - 43224222
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||| ||||||||||||||||| || |||||||||||||| | ||| |||||| ||||| |||| ||||    
T  43224292 tttttaaaaatgcgggtatggggatgggcattgtagtacccttcccattgggtactcattgccatccctac 43224222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 9355304 - 9355373
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| | ||||||| ||| ||| | | ||||||||||| ||| |||||||||||||||||    
T  9355304 gtattttttacaaacgtgggtatgaggatggatactatagtaccctacccattgggtacccattgtcatc 9355373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 17172363 - 17172430
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  17172363 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 17172430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 35092855 - 35092902
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctac 113  Q
    |||||||||| ||||||||||||||||| || || |||||||||||||    
T  35092855 gtattttttataaatgcgggtatggggacgggcactgtagtaccctac 35092902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 2959917 - 2959855
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    ||||||||||||| ||||||| |||| ||  | | ||||||||||||||| ||||||||||||    
T  2959917 attttttacaaatacgggtatagggatgggtactatagtaccctactcattgggtacccattg 2959855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 10066401 - 10066475
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||| |||||||||||| |||| |  || ||||||||| ||| ||| |||| |||||||||||| ||||    
T  10066401 gtattttttataaatgcgggtatagggacgcgcactgtagtaccatacccattgggtgcccattgtcatccctac 10066475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 1876185 - 1876254
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||||| ||  |   ||||||||| | ||| |||||||||||||||||    
T  1876185 gtattttttacaaacgcgggtatggggatgggtaccatagtacccttcccattgggtacccattgtcatc 1876254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 14088248 - 14088166
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||||||||    
T  14088248 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtagtaccctacccattgggtacccattgtcatc 14088166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 41616550 - 41616481
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||||||||||||||||| || ||||||||||||||||  || |||||||||||||||||    
T  41616550 gtattttttataaatgcgggtatggggacgggcattgtagtaccctacctattgggtacccattgtcatc 41616481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 15719310 - 15719392
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| |||||||| |||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  15719310 ggcacgggtacgggtattttttataaatgcggttatggggacgggcattgtagtaccctacccattgggtacccattgccatc 15719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 14087626 - 14087561
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||    
T  14087626 tttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 14087561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 24489691 - 24489756
Alignment:
Q  76 caaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctaca 141  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||| |||| |||||    
T  24489691 caaatgtgggtattgggaagggcattgcagtaccctactcatagggtacccattgccatccctaca 24489756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 30752 - 30684
Alignment:
Q  67 tattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||| ||||| |||||||||||||||||||  ||| |||| ||||||||||| ||||    
T  30752 tattttttacaaatgcaggtatagggaaggacattgtagtacggtacccataaggtacccattgccatc 30684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 6224961 - 6225043
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | ||| |||||| ||||||||||||||||| || |||||||||||||||| |||  | ||||||||||||||    
T  6224961 ggcacgggtacgagtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattagatacccattgtcatc 6225043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 14645294 - 14645213
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||| | || |||||||||||||||| ||| |||||||||||| ||||    
T  14645294 ggcacgggtacgggtattttttataaatgcgggtatggg-acgggcattgtagtaccctacccattgggtacccattgccatc 14645213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 25828508 - 25828577
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||| ||||||||| |||||||||| ||||| || |||||||| ||||| ||||||||||||||| ||||    
T  25828508 gtatattttacaaacgcgggtatggagaagggcactgtagtactctacttatagggtacccattgccatc 25828577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 31149841 - 31149906
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||| ||||    
T  31149841 tttttaaaaatgcgggtatggggatgggcagtgtagtaccctacccattgggtacccattgccatc 31149906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 32302367 - 32302300
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||| ||||||||||||| ||| | | ||||||||||| ||| ||||| |||||||||||    
T  32302367 attttttacaaacgcgggtatggggatggatactatagtaccctacccattgggtatccattgtcatc 32302300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 22632390 - 22632444
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtac 124  Q
    |||||||||||||| ||||||||| || |||||||||||||||| ||| ||||||    
T  22632390 tttttacaaatgcgagtatggggatgggcattgtagtaccctacccattgggtac 22632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 29455753 - 29455683
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||| || | ||||||| |||| ||||    
T  29455753 tttttaaaaatgcgggtatggggatggacattatagtaccctacccattggatgcccattgccatccctac 29455683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 19254631 - 19254703
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctac 140  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  |||  |||||||||||||||| ||||    
T  19254631 attttttacaaatgagggtatggggatggatactatagtaccctatccattaggtacccattgtcatccctac 19254703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 34718927 - 34718994
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  34718927 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 34718994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 41692611 - 41692678
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||| ||| | | ||||||||||  ||| |||||||||||| ||||    
T  41692611 attttttacaaatgagggtatggggatggatactatagtaccctatccattgggtacccattgccatc 41692678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 7977993 - 7977928
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||||| |||||| ||| || |||||||||||||||| ||| ||||| |||||| ||||    
T  7977993 tttttaaaaatgcaggtatgaggatgggcattgtagtaccctacccattgggtaaccattgccatc 7977928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 15674120 - 15674189
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||||| ||  | | ||||||||| | ||| || ||||||||||||||    
T  15674120 gtattttttacaaacgcgggtatggggatgggtactatagtaccctgcccattggatacccattgtcatc 15674189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 37226917 - 37226984
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||| ||||    
T  37226917 attttttacaaatgcgggtatggggaagggtactgtagtaccctacccattgggtatccattgccatc 37226984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 24789491 - 24789409
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||| ||| || |||||||||||||||| |||  ||||||||||| ||||    
T  24789491 ggcacgggtacgggtattttttataaatgcgggtatgaggacgggcattgtagtaccctacccatttggtacccattgccatc 24789409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 2472427 - 2472492
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||||||||||| || || |||||||||||||||| ||| || ||||||||| ||||    
T  2472427 tttttacaaatgcgggtatggagatgggcattgtagtaccctacccattggatacccattgccatc 2472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 30801210 - 30801137
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacat 142  Q
    |||||||||||| |||||||||| |||| || | ||||||||||   |||||||||||||||||||| ||||||    
T  30801210 ttttttacaaatacgggtatgggaaagggcactatagtaccctatctatagggtacccattgtcatccctacat 30801137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 3616994 - 3617085
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatcgctacatgt 144  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || | ||||||||||| ||| ||| |||||||| |||| || |||||    
T  3616994 ggcacgggtacgagtattttttataaatgcgggtatggggacgggcactatagtaccctacccattgggcacccattgccatccctgcatgt 3617085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 1667223 - 1667165
Alignment:
Q  77 aaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||||||| || |||||||||||||||| |||  ||||||||||| ||||    
T  1667223 aaatgcgggtatggggatgggcattgtagtaccctacccatttggtacccattgccatc 1667165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 24891564 - 24891630
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggaca-ttgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||||||||||| || || |||||||||||||| |||  ||||||||||| ||||    
T  24891564 tttttacaaatgcgggtatggggatgggcatttgtagtaccctacccattaggtacccattgccatc 24891630  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 26561370 - 26561438
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||||| ||||||  |||||||||  |||||| |||||||||||| |||||||| |||||    
T  26561370 gtattttttacaaatgtgggtataaggaaggacaccgtagta-cctactcataggatacccattatcatc 26561438  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 7057571 - 7057507
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattg 130  Q
    ||||||||||||||||| | ||| | ||||| || ||||||||||||| ||||| ||||||||||    
T  7057571 gtattttttacaaatgcagatatagagaagggcactgtagtaccctacccatagagtacccattg 7057507  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 6109577 - 6109519
Alignment:
Q  77 aaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||| |||||||||| ||||||||||||||||||  |||  ||||||||||| ||||    
T  6109577 aaatgcaggtatggggatggacattgtagtaccctatgcattaggtacccattgccatc 6109519  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 29528327 - 29528396
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||||||||| ||||| ||||| || |||| ||||||||   ||||||| ||||| |||||    
T  29528327 gtattttttacaaatgcggatatggagaagggcactgtaataccctaccgctagggtatccattatcatc 29528396  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 43239144 - 43239079
Alignment:
Q  70 tttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||| ||| ||||| |||| ||||||||||| |||||  ||||| ||||| |||||||||    
T  43239144 tttttacaaacgcgagtatgaggaatgacattgtagttccctatccatagagtaccaattgtcatc 43239079  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 19643643 - 19643719
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccatt 129  Q
    |||||||| | | ||| ||||||||||||| ||||||| || |  |||| ||||||||||| ||| |||||||||||    
T  19643643 ggcacgggtacgggtaatttttacaaatgcaggtatggagatgagcattatagtaccctacccattgggtacccatt 19643719  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 240595 - 240677
Alignment:
Q  53 ggcacgggcatgtgtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||| | | |||||||||| ||||||||||||||||| || || |||| |||||||| ||| |||||||||||| ||||    
T  240595 ggcacgggtacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattgggtacccattgccatc 240677  T

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Target: scaffold0312 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 6018 - 6084
Alignment:
Q  69 ttttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||| ||||||||  |||||||||| |||||||||||||||  ||| |||||||||||| ||||    
T  6018 ttttttataaatgcggacatggggaagggcattgtagtaccctatccattgggtacccattgccatc 6084  T

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Target: scaffold0230 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 26599 - 26532
Alignment:
Q  68 attttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| || |||||||| ||| | | ||||||||||  ||| |||||||||||||||||    
T  26599 attttttacaaatgaggatatggggatggatactatagtaccctatccattgggtacccattgtcatc 26532  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 72744 - 72798
Alignment:
Q  81 gcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    ||||||||||||||||  | | ||||||||||||||| |||||||||||| ||||    
T  72744 gcgggtatggggaaggggactatagtaccctactcatggggtacccattgccatc 72798  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 26268 - 26337
Alignment:
Q  66 gtattttttacaaatgcgggtatggggaaggacattgtagtaccctactcatagggtacccattgtcatc 135  Q
    |||||||||||||| ||||||||||||| ||  | | ||||||||||  ||| |||||||||||| ||||    
T  26268 gtattttttacaaacgcgggtatggggatgggtactatagtaccctatccattgggtacccattgccatc 26337  T

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